| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1299 |
|---|
| Symbol | glyA |
|---|
| ID | 4173347 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 1565337 |
|---|
| End bp | 1566593 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638054306 |
|---|
| Product | serine hydroxymethyltransferase |
|---|
| Protein accession | YP_660879 |
|---|
| Protein GI | 109897624 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0112] Glycine/serine hydroxymethyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0505032 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTATCAC GTGACATGAA TATTGCCGAT TTTGATCCTG AGTTGAGTCA AGCTATCGCG
CAAGAAACCC AGCGCCAAGA AGATCACATT GAACTGATCG CCTCTGAAAA CTACTGTAGC
CCGCGCGTAC TTGAAGCCCA AGGCTCGCAA CTAACCAATA AATACGCTGA AGGTTACCCG
CACAAGCGTT ACTACGGCGG TTGTGAATAC GTTGATATCG CAGAAGATTT AGCCATTGAG
CGTGCTAACC AATTATTCGG CTCTGACTAC GCTAACGTGC AGCCTCACTC TGGCTCACAA
GCTAACTCAG CGGTATTTAT GGCGTTACTT GACGCTGGTG ATACCGTGCT AGGGATGAGC
TTGGCACACG GTGGTCACTT AACCCACGGC GCACATGTTA GCTTCTCGGG CAAAACGTAT
AACGCAGTGC AGTACGGTAT CGATGAGCAA ACTGGCAAAA TCGATTACGA CGTAGTTGAA
GCGCTCGCGG TTGAGCATAA GCCAAAAATG ATCATCGGTG GTTTCTCAGC GTACTCAGGT
ATTGTTGATT GGCAGCGTTT CCGTGAAATC GCGGACAAAG TAGGTGCTTA CTTATTAGTG
GATATGGCTC ACGTTGCAGG TTTAGTGGCC GCTGGTTTAT ACCCTAACCC ATTACCTCAT
GCGCATGTGG TGACCACCAC TACGCATAAA ACCTTAGCTG GGCCACGTGG CGGTTTGATT
TTATCAGCTT GTGGCGATGA AGCGATTTAC AAAAAACTAA ACAGCTCAGT ATTCCCTGGT
AATCAAGGTG GTCCTTTGTG TCACGTGATT GCAGCGAAAG CCGTTGCGTT TAAAGAAGCA
TTACAGCCAG ATTTTAAAGC ATACCAACAG CAAGTATTGC TTAACGCGAA AGCCATGGTC
AGCGTGATGC AAGAGCGCGG GTACGACATC GTATCTGGCG GCACCGATAA CCACCTGTTC
TTGCTTGATT TGATCAGCAA AGATATCACA GGTAAAGATG CTGACGCAGC GCTAGGGCGC
GCTAACATCA CAGTGAACAA AAACTCAGTC CCTAACGACC CACGCTCTCC GTTTGTGACC
AGTGGTTTGC GTATTGGCTC ACCTGCCATT ACCCGCCGTG GTTTTAAAGA AGAACAAGCG
AAGCAAGTGG CTACGTGGAT TTGTGACGTT ATCGACAACA TCGAAGACGA AGCGGTGATC
GAACGCGTAA AAGGTGAAGT ACTAACCCTT TGCGGTAAGT TCCCGGTATA CGCGTAG
|
|---|
| Protein sequence | MLSRDMNIAD FDPELSQAIA QETQRQEDHI ELIASENYCS PRVLEAQGSQ LTNKYAEGYP
HKRYYGGCEY VDIAEDLAIE RANQLFGSDY ANVQPHSGSQ ANSAVFMALL DAGDTVLGMS
LAHGGHLTHG AHVSFSGKTY NAVQYGIDEQ TGKIDYDVVE ALAVEHKPKM IIGGFSAYSG
IVDWQRFREI ADKVGAYLLV DMAHVAGLVA AGLYPNPLPH AHVVTTTTHK TLAGPRGGLI
LSACGDEAIY KKLNSSVFPG NQGGPLCHVI AAKAVAFKEA LQPDFKAYQQ QVLLNAKAMV
SVMQERGYDI VSGGTDNHLF LLDLISKDIT GKDADAALGR ANITVNKNSV PNDPRSPFVT
SGLRIGSPAI TRRGFKEEQA KQVATWICDV IDNIEDEAVI ERVKGEVLTL CGKFPVYA
|
|---|
| |