| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1295 |
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| Symbol | |
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| ID | 4173343 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1556903 |
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| End bp | 1560574 |
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| Gene Length | 3672 bp |
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| Protein Length | 1223 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054302 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_660875 |
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| Protein GI | 109897620 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0981526 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTTTTA GCACTCATTT ACGCTTTTCT ACACTCAACT TTAATGGCTG GCTAAGTACA
TTTACCGCAT TTTTTTTAGC CGTCATTCTT GCCTCTTTTT TGGCCAGTGT ATTTAGCCCA
GGTGAAGCGT TGTGGTTATT TTTACCTGCC GTATTACTGG CTGCTTATCG GAAAAATTCG
GCGCTGGCCT ACCTTAGTTT CATCGGCGCA ATTTGCGTTG TGAGTTACCT GTTTCGCCAC
CATATTCCCT ATGCGCTATT ATCTGTTTTT TCATTGCAAA TCAGCTGGTT TTCACTGCTC
AGTATCGCCT TGATACAGCT GCTTACTAAA TTGACACGAC TTCAGCAACC CGTGTCAGCG
TTTGACGACG ACAGCAAAGT ATTGACCACT GACAGCAACG GCAAAGTCGT CACTGATGTA
TTAGAGCGTT TTGCGGTGTT TATGGGCGTA TTGACCCCCG ACGGTATTTT GCGCGAAGCG
AACAAGACCG CCCTTGTTTC AGCGTCACTG CAGGAAGATG AAGTCATCGG TCTGCCGTTC
GAGCAAACGT TCTGGTGGTC ACACAATAGC CAAGTGCAGC AATCGATCCG CAAAGCGATA
AACAAAGCAA AGCACGGTGT GTCTTCTCGT TTTGATACCA CAGCAAGGTT GGCTGACGAT
GTACTCATCG ATATAGATTT TATGCTGCAC CCCATTTTTG ATGAACATGG CAGTGTGGTG
CAGATTATTC CTTCAGGCAT CGACATCACC ACCAGAAAAC GTGCTGAGCG TAATTCGGCC
ATGTTGACGC AAGTCAGTTC TGACTTACTC AGTGCTGGCA GTTTAAAAAG AATCAAATCA
ATCATTACCG AAAACTTAGC TGCACACCTA GATTTAAGTG CCTGCATTTT TTGTGAAACT
CATCCCGTTT CAGGAAGGCT TGGGATCACG CATGTATGGC AGCACGCATC GCTAGCAGAA
ATGCCTAAAG CTAAGATGGA ACTGCCCTTT GAAATTGCCA TGTGCGAAAA AGAAAACCTC
ACCTTGATCG TGAATAATGT CGCCACGGAT CCCAGATACA CAGACGGTCA GTTTCAGGAA
AGAGGCATAG GTGCATTTAT TTGTGTGCCT ATCAGCTTAG ATAAGAAGAA CCATTTTGTA
TTAAGTGTTT ATCGTAGCGC TTCACATGAG TGGCGTGATG ACGAAATTGA ATTAGTGATC
GAGTTTGCTC GGCGTTTTTG GGTACGCACA GAGCACTTAA GAATTCTTGA AACTTTGCGT
GCCAGCAAAA CCACCTTAGA CATCACCCTT GAGGCCGCTC AAGTGGGTGA CTGGGAGGTG
GATTTAGTCA CAGGCTTAAC CCGACGCTCT TTGCATCACG ACAAATGCTT TGGTTACGAA
GCCCAAATAC CTGATGCTCA ATGGGGAATT GAAGGCTTTT ACGCCCATAT TCACCCCCAA
GACAGAGATG AAGTGAAATA TAAATTCGAA AAGTCGTTGA GAGACGGCAG CGACTTTCGC
GCTGAATTTC GCGTTATCTG GCCAGACAAA AGCATTCACT GGTTAGCGTC ATACGGCAGT
TTATACGGCG ACACGGACGG TAAACCTACG CGCGTGCTAG GTATTGTGGC AAACATAAGT
GAGCGCAAAC GAACCGAAGC GTTGCAGATT GCGCAAACCA ACGCCTTGGA GCAAATGGCC
CAAGAGGCAC CACTTAATAA TGTGCTGGAA ACCCTCATAT TGTCTTTAGA GGAGCATTCT
AAAAATGGCA TGATTGGCAG CATTATGCTG GTTGATGAAC ACGCCCAATG TTTGCACTTT
GCTGCCGGGC TCAGTCTTCC AAAAGCCTAT GTGCAACACA TTGATGGCCT GAAAATAAAC
CAACAAAGTG GCGCTTGTGG TACGTCTGCG GCTACCAAGC AAGCTGTGTT TGTAGCGGAT
ATTGCGTCTG ATCCACTGTG GGTAGAGCAC CGAGACTTAG CACTTGCTCA CAATTTACGG
GCGTGCTGGT CGTTGCCGAT AATTTCAGGC AAAGACGTGC TGGGCGTATT CGCTATGTAT
TACAGTTCAC CTCAAGCCCC TGCACAAATG GACTACGACA GCCTTGATAT CATCATGCGT
ACCGCTGAGC TCGTTATTAA GCGTAGGCAA AATGAACAAT CTGTCAGGTC AAGTGAAGAA
CGTTTTCGCG CGGTCGTCGA CAATGTGCCC CAGCTAGCAT GGATGGCCAA TGCTCAAGGC
GAAATAGAAT GGTTTAATCA GCGCTGGTTG TCTTATACCG GTACCACCAT GGAGCAAAAC
TTAAACGGTG GGTGGAAGGC GTACCATCAT CCTGACCACC AAGAGGCGGT ATTCAATAAA
TTTTCCGACT GTTTAGCCAA AGGTATCGAC TGGGAAGACA CCTTTCCGCT GCGGGGTGCA
AACGGTAAAT ATCGCTGGTT CCTATCCCGA ATGAATGCGA TCTATGCCCA AGATGGCCAG
CTAATCCGCT TTTTTGGTAC CAATACCGAT ATCACTGAAC AGCGTAAAAT GGCTGAAAAA
CTCACCAAAT TAACAAACAA GCTATCAGTG GCTGATAAGC GCAAAGATGA ATTTCTTGCC
ACATTAGCCC ATGAACTTCG AAACCCCTTA GCGCCCCTAA GAAACTCGAT GGAATTGATA
CGCAATGTCA AGACCGATCC CGCCATGATG CAGACCGCAG TGGCAACCAT GGATCGCCAA
GTTGCGCAAA TGGTACGCCT AATTGACGAT TTACTGGATA TTAGCCGTAT ATCAAAAGAT
AAACTGTCTT TGAAACGCCA ACGTATTGAT CTTAAAGACA TCGTTGAGCA AGCAGTAGAA
GCTGTGAGCC CCTACGCCAA ACGCTTGGGC CACTCGGTAC AGGTTAATAT GCCACATGAA
GCCATTTCTT TATTTGCTGA CCCTGCACGT TTAGCGCAAA TACTTGGTAA CCTGCTCAAC
AATGCGTGCA AATACACCCC TAAAAACGGG TTTATTTGGG TCACAGTCAA CTTAGGTGGT
GAGCAACAAG TCAGCATTAG CGTGAAAGAC AGTGGCTTGG GTATTGCTGA GCATATGCGC
TCACAAGTAT TTGAATTGTT TACCCAAGTA AGCAATCAGC TTGAGCAAGC TGAGGGTGGT
TTAGGTATCG GTCTGTCATT GGTCAAACGC TTAGTTGAAA TGCACGGCGG GCACGTCGAA
TGTAAAAGCG AGGGCTTAGG CCATGGTGCA GAGTTTATTG TCACCCTACC GAGCACACCT
GCTAGACCAA GTGGCACGCC AAAAACTGTC GGCGTGAATC GCGCGGTGCA AACAGAAGCG
TTAAATGTGC TGATAGTGGA TGATAACCAA GACAGTGCAG ACAGCATGCA GATGTTGCTT
AACGTACATC AGCACACCAC ACACGTGGTT TATGATGGTG AGCAAGCAGT TATCGCTGCA
GCGCAACACA AACCGGATGT CATTCTACTC GACATAGGCC TGCCTATTCT GGATGGTTAC
CAAGTGTGCA GCGCAATTCG TAAAGAGACA TGGGGCAAAA ATATAACGAT CATTGCCCTA
ACGGGTTGGG GGCAGGATGA AGATAGACGT AAATCGAAAG AAGCAGGTTT TGACCATCAT
ATGGTTAAGC CGATTTCATT AAACGCACTG TTAAACCTTT TGGCTCAAGT AAGCCCTGCT
AACGGATCGT AG
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| Protein sequence | MFFSTHLRFS TLNFNGWLST FTAFFLAVIL ASFLASVFSP GEALWLFLPA VLLAAYRKNS
ALAYLSFIGA ICVVSYLFRH HIPYALLSVF SLQISWFSLL SIALIQLLTK LTRLQQPVSA
FDDDSKVLTT DSNGKVVTDV LERFAVFMGV LTPDGILREA NKTALVSASL QEDEVIGLPF
EQTFWWSHNS QVQQSIRKAI NKAKHGVSSR FDTTARLADD VLIDIDFMLH PIFDEHGSVV
QIIPSGIDIT TRKRAERNSA MLTQVSSDLL SAGSLKRIKS IITENLAAHL DLSACIFCET
HPVSGRLGIT HVWQHASLAE MPKAKMELPF EIAMCEKENL TLIVNNVATD PRYTDGQFQE
RGIGAFICVP ISLDKKNHFV LSVYRSASHE WRDDEIELVI EFARRFWVRT EHLRILETLR
ASKTTLDITL EAAQVGDWEV DLVTGLTRRS LHHDKCFGYE AQIPDAQWGI EGFYAHIHPQ
DRDEVKYKFE KSLRDGSDFR AEFRVIWPDK SIHWLASYGS LYGDTDGKPT RVLGIVANIS
ERKRTEALQI AQTNALEQMA QEAPLNNVLE TLILSLEEHS KNGMIGSIML VDEHAQCLHF
AAGLSLPKAY VQHIDGLKIN QQSGACGTSA ATKQAVFVAD IASDPLWVEH RDLALAHNLR
ACWSLPIISG KDVLGVFAMY YSSPQAPAQM DYDSLDIIMR TAELVIKRRQ NEQSVRSSEE
RFRAVVDNVP QLAWMANAQG EIEWFNQRWL SYTGTTMEQN LNGGWKAYHH PDHQEAVFNK
FSDCLAKGID WEDTFPLRGA NGKYRWFLSR MNAIYAQDGQ LIRFFGTNTD ITEQRKMAEK
LTKLTNKLSV ADKRKDEFLA TLAHELRNPL APLRNSMELI RNVKTDPAMM QTAVATMDRQ
VAQMVRLIDD LLDISRISKD KLSLKRQRID LKDIVEQAVE AVSPYAKRLG HSVQVNMPHE
AISLFADPAR LAQILGNLLN NACKYTPKNG FIWVTVNLGG EQQVSISVKD SGLGIAEHMR
SQVFELFTQV SNQLEQAEGG LGIGLSLVKR LVEMHGGHVE CKSEGLGHGA EFIVTLPSTP
ARPSGTPKTV GVNRAVQTEA LNVLIVDDNQ DSADSMQMLL NVHQHTTHVV YDGEQAVIAA
AQHKPDVILL DIGLPILDGY QVCSAIRKET WGKNITIIAL TGWGQDEDRR KSKEAGFDHH
MVKPISLNAL LNLLAQVSPA NGS
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