| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1283 |
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| Symbol | |
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| ID | 4173331 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1540954 |
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| End bp | 1543065 |
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| Gene Length | 2112 bp |
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| Protein Length | 703 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638054290 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_660863 |
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| Protein GI | 109897608 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTTTTT CTAAGCTCAG GCGCGCATCA TTTTTCCAAA AGCAATTAAT GGCGATCATC
GGCACAAATT TGCTGATATT GGCCATTGCT GCCTTTCTTA TCTATTCCGC GTTTGTTGAT
GATTACCGCG ACAACCTCGT TAAAACTATG GACAGCAACG CCTCTTTGCT GTCAGCGGCA
AGCCGCTCAG CGTTACTTTT TCATGATGAG CATGCAGGCC AGACGATCCT GGCGTCTTTA
GCTAAGATCC CAGCCATGCG ATTTGCCCAA TTACTAGACT CTGAAAAAAA GCGCTTTGCG
ACTTATACCC GGGACGATGC AAGTTGGGAT GTTATGTTAG ATGACATCAA ACCTGGACAC
TTTTTTACAA ACGATAATCT TTACCTGACC CAAGACATTA CCTTAGGGGA GGACGTACTT
GGCTACATTG TTTTATCGGC TGATACTCAT TCGCTACAGG CTCAGCAGCG ACGGTACGGG
CGCATTGTAC TGTGGGTATT TGCATTGGGT TCTTTGTTAG CCTACCTCCT GAATTGGCGT
ATGCAAAAGC GCTTACAGTC ACCGGTTAAA CGCCTTATTC ACTTAGTTGA TTACGTCGCC
AAAGAAGGGC GTTACGATCA ACGTATTTTC AATCGTCGAC AAGACGATAT TGGGCGCTTG
GTCAACGGTA TTAACTCTAT GCTAGATACC ATTGAAGAGC ACCAATCAAA GTTGAGCGAA
CATCATGAGC ATCTAGAAGG GCTAGTAGAG TTGCGCACAG AGCAATTGTA CGAGCGTGCT
AATTTTGATG CGTTAACACA ACTACCAAAT AGACATTCCC TGACAGAAAA AATTAGTCAG
GCGATTGAAA TAGCCCGTGA GCGTAAAACC AATCTAGCCT TGATGTTTCT CGATTTAGAC
CGCTTTAAGG TCATAAATGA TAGCTTAGGG CACTTCATGG GTGACAAACT GTTAATTGAA
GTGGCCAAGA AGATCCAACA TAAACTAAGC GACAGTGACG TGGTAGGTCG TTGGGGGGGA
GATGAATTCG TTGTGCTAAT TCAAAACCCG AAGGAACTCA GCTCAGTGGA TAGTTTGGCA
AAAGAGATTA TCGCATCTTT GAGTCTGCCG CTTATTGTAT CTGGACATCA ATTACACATC
TCTACCAGTA TTGGCATTGC GTGTTTTCCT GATGATGGCG ACGATGCATC AAGTTTACTT
AAACATGCTG ACACTAGCAT GTATAAGGCA AAAGAATTGG GCCCTGGGCG GTTCCGCTTT
TTTGACCAAG ACATGTTGAA TGACTCAGTG TGGCGATTAG AGCTAGAAAC CCAATTGCGC
CAAGCCTCCG CTCAACAGCA GTTTGCTTTG GTGTATCAGC CTAAAGTGAA TGTGAACGAC
GAACAACTGG TTGGTTTAGA AGCTTTAATA AGATGGAATA ATGGCCAAGA ATATATTAAT
CCAGCCACTT TCTTACCCAT AGCAGAAGAC ATAGGGTTAA TGGAATCCAT CAGTGTGTGG
GTGTTAAAGC AGGCATGCCA GCAGAATGCA GATTGGCAGC GGGCGGGCTT TGATATTGTA
CCTGTTGCCG TGAACTTACC CGCATCGTTT TTGATGAGTC CCCAGTGCCT CGAGTTGATC
AAAGGCGCAT TGCATCAATC GGGTTTAGCG GCGCAGTATT TGGAAATAGA AATCACTGAA
AATACCTTCA TCGCATCTAC CGAGTTAGCG GTTGATGTAC TGAGTGCAAT TCACGGTTTG
GGGGTGAAAA TCGCCATTGA CGATTTTGGA ACAGGCTACT CATGTATGAG TTATTTGCGC
GACCTACCCA TCAATACATT AAAGATAGAC GGCATATTCA TCAATGATTT AGTTGCGCCA
GATTGTGTTC ATGAGGGGAA CGCTGAAGAC CATCACTTAC GGGATGAAGG CATAGTGCGC
ACTATTATCA CCTTAGGCAA AAGCCTAGGG TTAAGTACGG TTGCTGAGTG TGTGGAACAT
GATTACCAAG TACAGATCTT AAAATCGATG GGTTGTGACA TCATCCAAGG CTATTTCTAT
AGCAAACCTT TAAAAGTGGT CGCACTAGAA GCATATCTCG GTGCGCATGG CCGGGCTGCT
AAAGAATCTT AA
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| Protein sequence | MLFSKLRRAS FFQKQLMAII GTNLLILAIA AFLIYSAFVD DYRDNLVKTM DSNASLLSAA
SRSALLFHDE HAGQTILASL AKIPAMRFAQ LLDSEKKRFA TYTRDDASWD VMLDDIKPGH
FFTNDNLYLT QDITLGEDVL GYIVLSADTH SLQAQQRRYG RIVLWVFALG SLLAYLLNWR
MQKRLQSPVK RLIHLVDYVA KEGRYDQRIF NRRQDDIGRL VNGINSMLDT IEEHQSKLSE
HHEHLEGLVE LRTEQLYERA NFDALTQLPN RHSLTEKISQ AIEIARERKT NLALMFLDLD
RFKVINDSLG HFMGDKLLIE VAKKIQHKLS DSDVVGRWGG DEFVVLIQNP KELSSVDSLA
KEIIASLSLP LIVSGHQLHI STSIGIACFP DDGDDASSLL KHADTSMYKA KELGPGRFRF
FDQDMLNDSV WRLELETQLR QASAQQQFAL VYQPKVNVND EQLVGLEALI RWNNGQEYIN
PATFLPIAED IGLMESISVW VLKQACQQNA DWQRAGFDIV PVAVNLPASF LMSPQCLELI
KGALHQSGLA AQYLEIEITE NTFIASTELA VDVLSAIHGL GVKIAIDDFG TGYSCMSYLR
DLPINTLKID GIFINDLVAP DCVHEGNAED HHLRDEGIVR TIITLGKSLG LSTVAECVEH
DYQVQILKSM GCDIIQGYFY SKPLKVVALE AYLGAHGRAA KES
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