| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1280 |
|---|
| Symbol | |
|---|
| ID | 4173291 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 1537769 |
|---|
| End bp | 1539133 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638054287 |
|---|
| Product | DNA repair protein RadA |
|---|
| Protein accession | YP_660860 |
|---|
| Protein GI | 109897605 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1066] Predicted ATP-dependent serine protease |
|---|
| TIGRFAM ID | [TIGR00416] DNA repair protein RadA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAAC GTAAAACCGC CTATGTCTGT AGTGACTGTG GCGCAGAATT TCCGCGCTGG
CAAGGACAAT GTAATGACTG CAATGCTTGG AATACCATCA CAGAATTTGT GGTGAGCCCT
GCTCGCAGCC AGCCTGAGCG CAATTTGCGC GGCTACGCCG GTCAAACTGG GGCCAAAATT
GAGACCCTTA ACAGCATTGA TGTGGCTGAA TTACCGCGCT TTACTTCAAG CTTTAGTGAG
CTCGATAGAG TATTAGGCGG GGGTATCGTG CCGGGCAGTG CAATTTTGAT TGGCGGTTCT
CCTGGAGCAG GCAAAAGTAC CTTGTTGCTA CAAGTCATGT GCCAACTAGC AGCGCAGCGC
ACTGCGCTAT ATGTCACGGG GGAGGAATCG CTGCAACAAG TTGCTATGCG CGCTCAGCGC
TTAAATCTAC CTAGCGATAA GCTGAATATG CTGGCCGAAA CCAGTGTTGA AACTATCTGT
GAATTAGCAT TAACCCTCAA CCCCAAAATT ATGGTGATTG ACTCCATTCA GGTGATGCAT
GTGGCCGATG TGGCATCTGC ACCCGGTAGC GTTTCGCAAG TAAGAGAAAG CGCCGCATAT
TTAACTCGCT TTGCAAAGCA GCACCATATT GCCATGCTGT TAGTGGGGCA TGTTACGAAA
GATGGCAGTC TGGCTGGGCC CAAAGTGCTA GAGCACTGTA TTGATTGCTC CATGATGTTA
GAAGGGGAAA GTGACAGCCG GTATCGCACG TTGCGTAGTC AGAAAAACCG CTTTGGTGCT
GTGAACGAAT TGGGTGTGTT TGGCATGACC GAAAGAGGAT TAAAGGAAGT GAGTAATCCT
TCTGCCATCT TTTTAAGTCG AGGAGAAGAG CAATCTCCTG GCAGTATTGT TATGGTGGTA
TGGGAAGGCA CTCGCCCATT GCTGGTGGAA ATACAAGCAT TGGTGGATTA TTCACAGACC
GCAAACCCGC GTCGTGTCGC TGTTGGTCTT GAGCAAAACC GAATGGCGAT GCTTTTAGCA
GTATTGAATC GACACGGTGA TGTGCAGATG AACGACCAAG ACGTTTTCGC CAATGTCGTC
GGCGGCGTAA AGGTCGCAGA AACCAGTGCT GATTTAGCGC TTTTACTATC CATTGTTTCG
AGTTTTAGAA ATAAGACCCT TGATTCACAG TTAATTGCAT TTGGCGAAGT GGGACTTGCT
GGTGAAATAC GCCCCGTGCC TAATGGCTCA GAACGGATCA GCGAAGCAGC AAAGCATGGA
TTCAAGCGAG CTATCGTGCC AAAAGCCAAT ATGCCAAAAC AAAACATTAA TGGGATCGAA
GTGATCGGGG TATCTCGTTT AAGTGAAGCA CTTGAGGTGC TTTAA
|
|---|
| Protein sequence | MAKRKTAYVC SDCGAEFPRW QGQCNDCNAW NTITEFVVSP ARSQPERNLR GYAGQTGAKI
ETLNSIDVAE LPRFTSSFSE LDRVLGGGIV PGSAILIGGS PGAGKSTLLL QVMCQLAAQR
TALYVTGEES LQQVAMRAQR LNLPSDKLNM LAETSVETIC ELALTLNPKI MVIDSIQVMH
VADVASAPGS VSQVRESAAY LTRFAKQHHI AMLLVGHVTK DGSLAGPKVL EHCIDCSMML
EGESDSRYRT LRSQKNRFGA VNELGVFGMT ERGLKEVSNP SAIFLSRGEE QSPGSIVMVV
WEGTRPLLVE IQALVDYSQT ANPRRVAVGL EQNRMAMLLA VLNRHGDVQM NDQDVFANVV
GGVKVAETSA DLALLLSIVS SFRNKTLDSQ LIAFGEVGLA GEIRPVPNGS ERISEAAKHG
FKRAIVPKAN MPKQNINGIE VIGVSRLSEA LEVL
|
|---|
| |