| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1255 |
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| Symbol | |
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| ID | 4173266 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1503495 |
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| End bp | 1504688 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638054262 |
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| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| Protein accession | YP_660835 |
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| Protein GI | 109897580 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.508256 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAATA TTTGTATATT AGGCGCAACA GGCTCTATTG GACAAAGCAC TATTGATGTG
GTGTTGCGCC ACCCTGGTTT GTATCAGGTT TATGCGTTAA CAGCTCATAG CCAAATAGAT
AAGCTCCTTG AGCAAGCCAA ACTGTGCCAA CCTAAGTATC TTGTGTTATC CGACAGCACT
CGTTATCAAA ATGCCAAACA AGCGTTACTC GCCAGTGGAA TAAAAACAGA GCTTCTGTCA
GGCGCGCAAG CGTTAGCTGA TGTTGCCAGC GCTGATGAGG TTGATGTAGT GATGGCCGCT
ATTGTCGGTG GTGCGGGTTT ATTACCAACT ATCGCGGCGG TTAAAGCGGG CAAGAAGGTA
CTATTGGCCA ACAAAGAATC GTTGGTGATG TCAGGCGAGT TATTCATTAA TGCAGCTAAA
GAGCATGGCG CGACGATATT GCCCATTGAC AGTGAACACA ACGCTATATT TCAGTGCTTG
CCTCATGACT TTCAATACGG TGATTTGGCG GCCTCCGGGA TCAGCAGTAT CTTATTAACC
GGCTCGGGAG GGCCGTTTCG GGAAACGCCA TTAAATCGTT TATCTGAGAT GACACCTGCT
CAAGCATGTG CTCACCCTAA TTGGGATATG GGGCAAAAGA TATCGGTCGA TTCCGCCACT
ATGATGAATA AAGGCTTGGA GTTTATTGAA GCGCGTTGGT TATTTGGCTT GCAAACGAGT
GATATCAAAG TGGTATTACA TCCTCAGAGT ATTATTCATT CCATGGTGCA GTATTGCGAC
GGTTCAGTGT TAGCCCAAAT GGGCAACCCA GATATGCGCA CGCCGATTGC CCATGGCTTA
GCGTTTCCAA AACGCATTGA TTCTGGGGTT AAACCTCTGG ACTTCCAAAA CGTGAGCAAT
TTTAGTTTCG ACGAACCTGA GCCACAACGC TATCCCAATT TATATTTGGC AATAGAAGCA
TCTGATGCAG GCCAATATGC TACAACCGCA TTAAATGCAG CGAATGAAGT GGCAGTGGCA
GCTTTCTTAT CTGGCCAAAT TGGATTTAGC CAAATAGCCC AAGTCAATCA ACAATGCGTA
GCAAAAATGC AGGGGTGTCA GCTCGATGAC ATCAATGCCA TTGTTGAGTG GGATAAGGAA
TGTCGTCGTC AGGCACAACA AATTATTTCA TCTTACTCAA GAGAGGCGCG CTAA
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| Protein sequence | MQNICILGAT GSIGQSTIDV VLRHPGLYQV YALTAHSQID KLLEQAKLCQ PKYLVLSDST
RYQNAKQALL ASGIKTELLS GAQALADVAS ADEVDVVMAA IVGGAGLLPT IAAVKAGKKV
LLANKESLVM SGELFINAAK EHGATILPID SEHNAIFQCL PHDFQYGDLA ASGISSILLT
GSGGPFRETP LNRLSEMTPA QACAHPNWDM GQKISVDSAT MMNKGLEFIE ARWLFGLQTS
DIKVVLHPQS IIHSMVQYCD GSVLAQMGNP DMRTPIAHGL AFPKRIDSGV KPLDFQNVSN
FSFDEPEPQR YPNLYLAIEA SDAGQYATTA LNAANEVAVA AFLSGQIGFS QIAQVNQQCV
AKMQGCQLDD INAIVEWDKE CRRQAQQIIS SYSREAR
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