Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1238 |
Symbol | |
ID | 4172704 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 1486264 |
End bp | 1487487 |
Gene Length | 1224 bp |
Protein Length | 407 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638054245 |
Product | cysteine desulfurase IscS |
Protein accession | YP_660818 |
Protein GI | 109897563 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1104] Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes |
TIGRFAM ID | [TIGR02006] cysteine desulfurase IscS [TIGR03402] cysteine desulfurase NifS |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.01856 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGACA TTAAGTTACC AATTTATTTA GATTATTCAT CAACCACCCC GGTTGACCCT CGTGTTGCTG CCAAAATGGC AGAGTGTTTA ACCAACGAAG GCAACTTTGG TAACCCTGCA TCGCGTTCTC ACCGTTTCGG TTGGGTAGCA GAAGAAGCAG TCGACGTTGC TCGTAATCAA ATTGCTGATT TGATCAATGC AGATCCTCGT GAAATTGTTT TCACCTCTGG CGCAACAGAA TCAAATAACC TTGCAATTAA AGGCGCTGCA CATTTTTACG GCAAGAAAGG TAAGCACCTC ATCACAGTGA AAACTGAGCA TAAAGCCGTA CTTGATACGT GCCGCCAGTT AGAGCGTGAA GGGTTTGAAG TGACGTATTT AGATCCTGAG CCAAATGGTT TGGTTGATAT CGAAAAATTC ACAGCAGCCA TCCGCCCAGA CACGATTCTT GCTAGTGTGA TGCACGTAAA CAACGAGATT GGCGTGATCC AAGACATCGC TGCTATCGGA GAAGTGTGCC GCGAGCGTAA AGTGTTGTTC CATGTTGACG CTGCGCAAAG CACAGGCAAA GTGGCAATCG ATTTACAAGC GCTGAAAGTA GACATGATGT CCTTCTCAGC ACATAAATCT TACGGTCCCA AGGGGATTGG AGCACTTTAC GTTAGTCGTA AGCCTCGCGT TCGTCTTGAA GCGCAAATGC ACGGTGGCGG CCATGAGCGT GGTATGCGCT CTGGTACCAT GGCAACTCAT CAAATTGTAG GTATGGGTGA AGCATTCCGT ATCGCACAGG AAGAAATGGC CACCGAGAAC GAACGTATTC TAATGCTACG TAATCGCTTA TGGGATGGAA TCAAAGATAT TGAAGCGGTT TACATCAATG GTGACATTGA ACAACGCGTT GCAGCGAACT TAAATGTGAG TTTTGCATTC GTTGAAGGTG AGTCTTTGAT CATGGCCCTT AAAGATATGG CCGTATCATC TGGTTCAGCT TGTACATCAG CCAGCTTAGA GCCGTCTTAT GTACTTCGCG CGCTTGGTTT GAATGATGAA TTGGCCCATA GCTCAATTCG TTTCACAATC GGCCGTTTTA CCACCGAAGC TGAAATCGAC CATGTGATAA GCGTAGTACG TAACGCAATC GACAAATTAC GTGATATGTC TCCTTTGTGG GATATGTACA AAGAAGGCAT TGATTTGAAT ACCGTTGAGT GGGCACACCA CTAG
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Protein sequence | MSDIKLPIYL DYSSTTPVDP RVAAKMAECL TNEGNFGNPA SRSHRFGWVA EEAVDVARNQ IADLINADPR EIVFTSGATE SNNLAIKGAA HFYGKKGKHL ITVKTEHKAV LDTCRQLERE GFEVTYLDPE PNGLVDIEKF TAAIRPDTIL ASVMHVNNEI GVIQDIAAIG EVCRERKVLF HVDAAQSTGK VAIDLQALKV DMMSFSAHKS YGPKGIGALY VSRKPRVRLE AQMHGGGHER GMRSGTMATH QIVGMGEAFR IAQEEMATEN ERILMLRNRL WDGIKDIEAV YINGDIEQRV AANLNVSFAF VEGESLIMAL KDMAVSSGSA CTSASLEPSY VLRALGLNDE LAHSSIRFTI GRFTTEAEID HVISVVRNAI DKLRDMSPLW DMYKEGIDLN TVEWAHH
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