| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1190 |
|---|
| Symbol | |
|---|
| ID | 4172596 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 1434660 |
|---|
| End bp | 1436132 |
|---|
| Gene Length | 1473 bp |
|---|
| Protein Length | 490 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 638054197 |
|---|
| Product | polysaccharide biosynthesis protein |
|---|
| Protein accession | YP_660770 |
|---|
| Protein GI | 109897515 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAATG CATCCAGCAA ACTTATTAAT AGTGCATCTC TGTTAATAGC CGGTAAATTC
TTTCAACGCT CTGTTGGTCT AATCAGCATT GTGATTTTAG CGCGCGTGCT CACACCACAA
GATTTCGCTA TCGCCGCAAT CATATCTATG GTGATTTATT TCTTTGATGT CCTCTCTGAC
TTAGGCAATG AACAGTATAT TATTCAGAAA AAAGAGGTAT TTGATGGGGA TTTAGACGCA
GCCTGGACCA TCAATATACT GATAAAAGGT TGCCTTACGC TCCTCCTCGT TCTATGCATA
CCATTCATCA ATAGTTTCTA CTCTGAAATG CAACTCACTG GCGCACTTTT GGCTGCGACG
TGCGTTTTGC CGATACGCGC GTTGCGCAAC TCTGGAATAC TACTTTTTCA ACGTGAATTA
GCGTACAAGC AATTGTTCTT CTTAACGATA TTTCAGCGTC TCGGTTCATT TTGTGCTGTG
ATGCTAATGA TTTGGATTTA TCCCAGTTTT TGGGCGCTCA TCATCGGTGA TATTACATCG
GCGTTAATTT TCACTTTCGG CTCTTACCTT GTGCATACTT TTCGGCCTTC TTTTTCCCTG
AAAAATATAA AGCAGCAATG GTTATTTTCA AGATGGCTAC TGGCCAAAAA TATCATTGGA
TATACCCGCT CTCAAATTGA TACATTTATT GTATCGAGTC TTTTTAACGC TCGTGATCTT
GGCAGATATT ACCTTTCTCG TGATATTGTA ATGTTACCAA GTCAAAACTT TCTGACCCCT
GCAATTCAAC CTTTACTTGC CACCTTCAGT GCCAAGCACC ACAGTGGAAA AACCTTGAAC
GGGCAGATAG AATTGTCGCT CATGGCCACA ACCGTGCTCA CTTTACCCAT CGTTTTTTAT
ATTTGGCATT TCCCTGCTCC ACTTATCGAT ACAGTTTTGG GCGAACAATG GAGCGATAGC
TACTTATTGC TTAGCCGGTT ATCTCTATTA GTGCTTTATA TCCCCTTCAT TGTATTGTTC
GAACAAATCA TGATTGCAAA AGGGTGGATA TCCAAATTAC TGATGTTTGA CATCGCTAGC
CTACTTTTAA TATTTTTTGG CTTATTTACT TTCGGCGACA CAGATTTGCC CGAATTTGCA
AAACTTAGAG GGCTATTAGG TATAGGTGCA ACTTGTGTGT TGATTTTATT TGTTCGATTG
CAAGTTAACT TCTCCCTGTT AGCTTGGGGA ATATGGTGTT TAATATGTGT ATCCGTGGCA
CTTTTAAGCG TTATAGGGGC GCAGTACGTC AGTCGCATCA TCGACTCATC AGGCCTTGCG
ATGCTTCTTT TATCTGGGGG AGTTTTTGCA TTGTTATATA TGTCCGCCAT GGTATTGATT
GTGCAAACTT TGGCGCCACG GAGTGAAAGA TGTCTCTTTT TTAAACGTTT AATGCACAAA
TATATCGCCC AAATAAGAGA AAAATTAGGA TGA
|
|---|
| Protein sequence | MNNASSKLIN SASLLIAGKF FQRSVGLISI VILARVLTPQ DFAIAAIISM VIYFFDVLSD
LGNEQYIIQK KEVFDGDLDA AWTINILIKG CLTLLLVLCI PFINSFYSEM QLTGALLAAT
CVLPIRALRN SGILLFQREL AYKQLFFLTI FQRLGSFCAV MLMIWIYPSF WALIIGDITS
ALIFTFGSYL VHTFRPSFSL KNIKQQWLFS RWLLAKNIIG YTRSQIDTFI VSSLFNARDL
GRYYLSRDIV MLPSQNFLTP AIQPLLATFS AKHHSGKTLN GQIELSLMAT TVLTLPIVFY
IWHFPAPLID TVLGEQWSDS YLLLSRLSLL VLYIPFIVLF EQIMIAKGWI SKLLMFDIAS
LLLIFFGLFT FGDTDLPEFA KLRGLLGIGA TCVLILFVRL QVNFSLLAWG IWCLICVSVA
LLSVIGAQYV SRIIDSSGLA MLLLSGGVFA LLYMSAMVLI VQTLAPRSER CLFFKRLMHK
YIAQIREKLG
|
|---|
| |