| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1187 |
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| Symbol | |
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| ID | 4172593 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1430096 |
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| End bp | 1431562 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638054194 |
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| Product | polysaccharide biosynthesis protein |
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| Protein accession | YP_660767 |
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| Protein GI | 109897512 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGTAAAT TAAAATATGA GGGCTCTTTT AGATCAGCTC TGGCTTACTC ATTTATAACG
AAGTATCTAA ACATCGGTTT GCAACTTATC AGCACTATTG TTTTAGTAAG GTTGATCACC
CCTGAGGAAT ATGGCCTTTA TACTATAGCC TTTATATTTA TGGTTACGGC TTCAATCATA
AAAGAGTTCG GTGTAAACAA TTATCTGATT AAAGAGGAAA AGTTAACCCA AGAGATTATT
CAAAGTGCCT ATGGCACCCT ACTTATAATC TCGTTTATTT CAGGAGCCGT GCTATTTTTT
AGCGCTTCGC CTATAGCTGA TTTCTATCAA CAGCCTGAGC TAATCAATAT ACTGCAATTA
CTTTCATTGA ATATATTCCT TGCTCCCTTT GGTTCCATCA TTGATTGCCT ATTAAAACGC
GAGTTGAACT TTAAGCCAGC GTTAATCACA GGTACTTCGA GTCAATTTAT CAGTGTACTG
GCTATGATAT GTATGGCTTA CAGTGACTTC GGTGTGTATA CGTTAGTATA CGGCTCATTA
ATTCAAACCG TAGTTCAAGC TTTATTACTG CAATTTTACC GTCCTCAAAA TATGCCTTTA
ATGCCCAAGT TAAGTCAAAG TCGTAAGATA CTCAGCTATT CAAAATTTGT TGGTGTATAC
GGGATCGTTG GCCATTTTGG TACGTATATA GTGGAACTTC TTTCTGGTAA ATTCTTCACC
TTAGAGCTTA CAGGACAATT TAATCGAGCT TCGTCAACGG CCTCACTATT TAATAAGCTT
TTTACAGAAG CCCTGAACCC AGTTATCTCC CCCTATGCTT CAAAGTTAAA ACGAAACGGA
GAAGGGCTTA TGCAACGCAT GAGAGTCATC ATCGTTTTGA CGTTAAGCTG CGCTTGGCCT
TTTTATGCTG TACTAGGGCT ATGCGCGGAG CCAGTCGTAT TGATTTTGTT TGGCGAAAAG
TGGATGACCT CTAGTTACTT TTTGCAAATA TTTTGCACTG CGCGTATTTT ATCCTCGAGC
GTGCAAACTC TAGAGCCGAT CCTGATGGGC CTGGGAATGG CAAAGGCACT AATGAAGATA
GTGTTGATTC TCAACGTTCT GCGAATATTT ATCAGTATAT TGCTCCTGCA ATATGGACTA
ATGGTGATGA TTATATGCAC TTCACTCACC TTGCCATTAC TAAGAATATC GCTGTTTGTC
TTCGTACTAC ATCGTAAAAA CTTAGTTGAC TGGCATACCT ACCTATCTTG GTTGAAGCCA
CCAGCCATAC TACTCATCGC CAGTGCTGCT CCATTATGTT TAACAAAACT ATATTTAGGT
CCAAACTGGT GGCAAAGTTA TATATATTTA ATTCCGGCAA TCATTTTTTC CGCAATTTTG
TGGTTAATGT TATTGTCGAA ACAGGAAGAC TCTGCGATCG TGATCAAGGA AGTCAGAAGC
AAATTATTTA ATAAAGCTAA AAAGTAA
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| Protein sequence | MSKLKYEGSF RSALAYSFIT KYLNIGLQLI STIVLVRLIT PEEYGLYTIA FIFMVTASII
KEFGVNNYLI KEEKLTQEII QSAYGTLLII SFISGAVLFF SASPIADFYQ QPELINILQL
LSLNIFLAPF GSIIDCLLKR ELNFKPALIT GTSSQFISVL AMICMAYSDF GVYTLVYGSL
IQTVVQALLL QFYRPQNMPL MPKLSQSRKI LSYSKFVGVY GIVGHFGTYI VELLSGKFFT
LELTGQFNRA SSTASLFNKL FTEALNPVIS PYASKLKRNG EGLMQRMRVI IVLTLSCAWP
FYAVLGLCAE PVVLILFGEK WMTSSYFLQI FCTARILSSS VQTLEPILMG LGMAKALMKI
VLILNVLRIF ISILLLQYGL MVMIICTSLT LPLLRISLFV FVLHRKNLVD WHTYLSWLKP
PAILLIASAA PLCLTKLYLG PNWWQSYIYL IPAIIFSAIL WLMLLSKQED SAIVIKEVRS
KLFNKAKK
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