| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1169 |
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| Symbol | |
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| ID | 4172575 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1409986 |
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| End bp | 1411569 |
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| Gene Length | 1584 bp |
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| Protein Length | 527 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638054176 |
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| Product | lipopolysaccharide biosynthesis |
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| Protein accession | YP_660749 |
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| Protein GI | 109897494 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
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| TIGRFAM ID | [TIGR03007] polysaccharide chain length determinant protein, PEP-CTERM locus subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGATT TACAGAAAAC GATTGAGCTT CTGCTTGATT ATCTTAGGGG CGTTTGGGTA
AAAAAGCGTT ATGTCATGAT TTGTTCGTGG CTCATTTGCC CTTTAGGGTT CGCTTATGTG
GCCTCCATGC CTGACACCTA TGAGTCGCAA GCTCGCGTTT ACGTTGATAC GCGATCCGTC
TTACAACCTT TGTTGCGTGG CTTAGCTGTT CAAACGAATC CACAGCAAGA GATTTCTATG
ATGGTTAAAA CACTGTTAAG TAGACCCAAC CTAGAAATTA TCGCTCGAGA ATCTGATTTA
GACATCACCG CGCTCACACC CGGTGATTAT GAAAATGTTA TCAGCGAACT AGATAGCAAT
TTGAAACTTA GGGCTGTGGG CCGAGATAAC TTGTACACTA TTTCATATAG TAATAGCGAT
CCGCAGATGT CTAAAACAGT CGTGCAAGAG ACGCTAGACT TATTTGTGGA AGGTGCCCTC
GGCAGCTCGA GAAAGGACTC AGATTCAGCA AGTAGATTCA TTGAACAACA GATCTCTGAG
TATGAGGCTA GACTGACCAA TGCTGAACAA CGCGTTGCAG ATTTCAAACG TAAGTATGCT
ACCTTACTTC CCAATAAAGG TTCTTTTTAT CAAAACTACA CACAATTAAA AGAACAAAAA
GAGCAAACTG AATTATCGAT AAAAGAAACT GAACAGCAAA TCAAAGCATT AACTGGAGAG
ATAAATCAAT CTAGTTCACG CATTGATGGT TTTGCTGTTA AACCCTCCGA TTCTAATTCT
TCTTTATCTA CCCGTTTTGA TGCCAGAATT CAAAATTTAG AAGAGCGCCT CGATGAATTA
AAACTCAAGT ATACTGAGCT CCACCCTGAC GTGATTGAAG CCAATTCATT ACTTGAGTCA
CTTCAAACAT CTAGACAAGA GGAAATAGAC GAGTACTTAG AATCAGCGAA TGCAGGCGAG
AGCGGCGGTG GAAGTTTAAA TGCATTATCC ACTGAAATCC GGATTGAAAT AAGCCGCTTA
CAAAGCAACA TCGCTTCTTT GGAGGTGCGA CGGGACGACT TTGAGCAAAA AATTGAATCT
CTGCAACAAA AAATCGATTT GGTACCTCAG GTAGAGGCTG AATATACGGC ATTGAATCGG
GATTACGGTA TTACGAAACG AAAGTACGAA GAGCTACTGT CAAGAAGAGA GTCAGCGGAT
TTAGCACAAA AAGCTGATGT TTCATCTGAA GATGTTCAAT TCAGAGTGAT TGATCCCCCC
CTAGCTCCAT TGACCCCAAG CGGACCAAAC CGGTTGATTG CGTACACGAC GGTGGTGTTC
ATTGGTTTTG GAGCGGGTGT GGCGATCGCA TTTTTAATAA GTCAAATTAA CCCAATCCTT
ATCCGAGGTA GTCAACTAAC CACACTAACG TCTTATCCGG TTTTAGGCGT TGTTTCTCAT
CTTAATGTCA AAGGGATACG CAAAGTTAAC CGAGCTAGAA TATTAGTCTT TGCGTTTTCT
TCAGGTTTGA TTTTAATGTT TTACGGCGCT TTGATGGTCA CTGAAATAAT GAATATCGAT
GTCATATCGA GGGTATTAGC ATGA
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| Protein sequence | MQDLQKTIEL LLDYLRGVWV KKRYVMICSW LICPLGFAYV ASMPDTYESQ ARVYVDTRSV
LQPLLRGLAV QTNPQQEISM MVKTLLSRPN LEIIARESDL DITALTPGDY ENVISELDSN
LKLRAVGRDN LYTISYSNSD PQMSKTVVQE TLDLFVEGAL GSSRKDSDSA SRFIEQQISE
YEARLTNAEQ RVADFKRKYA TLLPNKGSFY QNYTQLKEQK EQTELSIKET EQQIKALTGE
INQSSSRIDG FAVKPSDSNS SLSTRFDARI QNLEERLDEL KLKYTELHPD VIEANSLLES
LQTSRQEEID EYLESANAGE SGGGSLNALS TEIRIEISRL QSNIASLEVR RDDFEQKIES
LQQKIDLVPQ VEAEYTALNR DYGITKRKYE ELLSRRESAD LAQKADVSSE DVQFRVIDPP
LAPLTPSGPN RLIAYTTVVF IGFGAGVAIA FLISQINPIL IRGSQLTTLT SYPVLGVVSH
LNVKGIRKVN RARILVFAFS SGLILMFYGA LMVTEIMNID VISRVLA
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