| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1156 |
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| Symbol | |
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| ID | 4173207 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1396935 |
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| End bp | 1398164 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638054163 |
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| Product | D-3-phosphoglycerate dehydrogenase |
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| Protein accession | YP_660736 |
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| Protein GI | 109897481 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
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| TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCAAAG TTTCGCTTCA AAAAGACAAG ATTAAAATTT TACTTCTCGA AGGTTTACAC
CAGAGCAGCT TGGATACACT GAAAGCAAAT GGTTATGAGA ATATTGAGTA CTTGAAAACG
TCGTTACCTG AAGACGAATT AATTGAAAAA ATTAAAGATG TGCATTTCAT CGGTATTCGC
TCACGTACTC AGCTAACCGA GGCGGTTATC GCAGCGGCGA ACAAATTAGT TGCGGTCGGG
TGTTTCTGTA TTGGTACTAA TCAAGTCGAT CTTAAAGCTA CCCAGAAGCG CGGTATTCCT
GTTTTTAACG CGCCATTCTC TAATACGCGT TCTGTGGCTG AGTTGGTACT AGGTCAACTG
ATTTTATTAT TACGCGGTGT GCCTCAGCGC AACGCTAAAG CCCATCGCGG TGAGTGGGAC
AAGAGCGCAA ATGGCTCGTT TGAAGCCCGT GGCAAAACGT TAGGCATTAT TGGCTACGGT
CATATTGGTA CTCAGCTGAG TATTTTGGCT GAGCATTTGG GCATGCGCGT GCAATTTTTT
GATATCGAAG ATAAATTGGT GTTGGGTAAC TCGACGCAAG TCAAATCGAT GAAAGAATTG
ATGAGTACCT CTGATGTCGT GAGCTTGCAT GTACCTGAAA CCGCACAGAC TCAAAACATG
ATTGGCGCGA CCGAGTTATC GTGGATGAAG CAAGGCGCTA TTCTTATCAA CGCGGCACGT
GGTACTGTGA TTGATATCGC TGCGTTGGTG GATGTACTTG AAGCGGGTAA GCTAAGTGGC
GCGGCCATTG ATGTTTTCCC TGTTGAGCCT AAGTCAAACA AAGAAGAATT CGAGTCACCC
TTGCGTAAAT TCGACAATGT GATTTTGACC CCTCATGTGG GGGGTAGCAC GCAAGAAGCG
CAGCAGAATA TTGGTATCGA AGTGGCAGGT AAGCTTGCGA AATACAGCGA CAATGGTTCG
ACCTTGTCAG CGGTTAACTT CCCTGAAGTA TCCCTGCCTT CTCATGCTGA CCGCTCACGT
TTGTTACATA TCCATAAGAA TGCGCCGGGT GTATTAACCC AGATTAACCA AGCGTTCGCA
GAAAAGAATA TCAACATCGC AGCTCAGTAT CTGCAGACCG ACGACATCAT TGGTTATGTG
GTGATTGATG TTGAAACTGA CGATGCAGAT GAAGCGTTAG AACAGCTAAA CTTGATTGAT
GGCACCATTA AGTCACGTAT TTTGTTGTAG
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| Protein sequence | MSKVSLQKDK IKILLLEGLH QSSLDTLKAN GYENIEYLKT SLPEDELIEK IKDVHFIGIR
SRTQLTEAVI AAANKLVAVG CFCIGTNQVD LKATQKRGIP VFNAPFSNTR SVAELVLGQL
ILLLRGVPQR NAKAHRGEWD KSANGSFEAR GKTLGIIGYG HIGTQLSILA EHLGMRVQFF
DIEDKLVLGN STQVKSMKEL MSTSDVVSLH VPETAQTQNM IGATELSWMK QGAILINAAR
GTVIDIAALV DVLEAGKLSG AAIDVFPVEP KSNKEEFESP LRKFDNVILT PHVGGSTQEA
QQNIGIEVAG KLAKYSDNGS TLSAVNFPEV SLPSHADRSR LLHIHKNAPG VLTQINQAFA
EKNINIAAQY LQTDDIIGYV VIDVETDDAD EALEQLNLID GTIKSRILL
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