| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1104 |
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| Symbol | |
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| ID | 4173633 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1329512 |
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| End bp | 1330879 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638054110 |
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| Product | coproporphyrinogen III oxidase |
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| Protein accession | YP_660684 |
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| Protein GI | 109897429 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
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| TIGRFAM ID | [TIGR00538] oxygen-independent coproporphyrinogen III oxidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACCCAT CTGTTACGTT AGATCCCGCT TTACTTGAAA AATATCCACT TCGTGGACCG
CGATATACGT CTTATCCGAC AGCGCCAAAC TTCACCCCCT TATTCAAGCA AGCCGATTTC
TTAAACGCTG CAGAGCAAAG TGATAACAAA AACCTCTCTT TATATGTACA CATCCCGTTT
TGCCATTATC TTTGCTACTA CTGTGGCTGC AATAAAATTG TGACCCAGTT ACAGACCAAA
GCAAATGTGT ACCTTAAGCA TCTAATTGAA GAAATAAAGC AGCAAGCCAA GCACTTTGGG
GCGAAAGCGG TTACTCACTT ACACTTCGGC GGCGGAACAC CCAATTTTCT AACTGACGAT
CAGTTACTGC AACTGATGAA CGAGCTCAAA ACGCATTTTT ATTTCACCAC TGACGCACAA
ATAAGTATCG AGATAGACCC AAGAGATATG ACCGTTGGGC GTATTGATGC CATGGCAGAC
ATGGGATTCA ACCGTTTGAG TATCGGTTTA CAAGATACAG ATCCTAAAGT ACAAAAAGCG
ATCAATAGGG TGCAGTCGAC GGAACTCATA GCGTCTTTGG TGGCTCGTGC CAAAGAGCGT
CACTTTCGTT CAGTCAACTT AGATCTTATT TACGGCCTGC CTTTTCAAAC CCCTGAAAGT
TTTGCCAATA CATTAGAGGC CGTACATGCG ATGCAAGTGG AGCGTGTGTC ACTGTTTAGC
TATGCCCACT TACCAGAGCG TTTTGCTGCA CAGCGAAAAT TGTCAGTAGA CGCCCTACCG
GACACAGAGC AAAAGCTCGC GTTAATGCAT CTAGCTGTGG ATAAACTTAC CCAATTTGGA
TATCAATTCA TCGGCATAGA TCACTTTGCG TTACCGAATG ATGAATTAGC GCTAGCCCAA
CAAAACAACA GCTTAATGCG TAACTTCCAA GGCTATACCA CGGGGCAAAA TACCGACCTG
CTAGGGTTAG GAGTATCTGC AATTAGCGCC GTGGGCGAGA GCTACAGCCA GAACCAAAAA
GGACTTGCTG ATTACTACTA CGCCATCGAA CACCAGAAAT CCGCCCTTGA GAAAGGATTG
AAACTCAGCA AGGACGACCG TATTCGACGC CGAGTGATTA GCGACATTAT GTGTAATTCC
ATGGTTGATA AAACCGCTAT CTCTGTGTGC TTTGATATAG ATTTTGATGA GTACTTTGCT
AGCGAATTGC GTGGATTAAC TATGTTTATT CAAGATGGTT TGATGCTAAA TTTACCCCAC
GCACTTTACG TTCAGCCCAA AGCCCAACTC TTGTTACGCA GCATTTGCAT GGCATTTGAT
GCCTATCTGG GGCTCGATAC ACAGCAGAAG TTTTCAGCGA CGATATAG
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| Protein sequence | MHPSVTLDPA LLEKYPLRGP RYTSYPTAPN FTPLFKQADF LNAAEQSDNK NLSLYVHIPF
CHYLCYYCGC NKIVTQLQTK ANVYLKHLIE EIKQQAKHFG AKAVTHLHFG GGTPNFLTDD
QLLQLMNELK THFYFTTDAQ ISIEIDPRDM TVGRIDAMAD MGFNRLSIGL QDTDPKVQKA
INRVQSTELI ASLVARAKER HFRSVNLDLI YGLPFQTPES FANTLEAVHA MQVERVSLFS
YAHLPERFAA QRKLSVDALP DTEQKLALMH LAVDKLTQFG YQFIGIDHFA LPNDELALAQ
QNNSLMRNFQ GYTTGQNTDL LGLGVSAISA VGESYSQNQK GLADYYYAIE HQKSALEKGL
KLSKDDRIRR RVISDIMCNS MVDKTAISVC FDIDFDEYFA SELRGLTMFI QDGLMLNLPH
ALYVQPKAQL LLRSICMAFD AYLGLDTQQK FSATI
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