Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1070 |
Symbol | |
ID | 4172856 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 1282626 |
End bp | 1284035 |
Gene Length | 1410 bp |
Protein Length | 469 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638054076 |
Product | sugar transferase |
Protein accession | YP_660650 |
Protein GI | 109897395 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2148] Sugar transferases involved in lipopolysaccharide synthesis |
TIGRFAM ID | [TIGR03023] Undecaprenyl-phosphate glucose phosphotransferase [TIGR03025] exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCATAACA AAAGCCCCGG GGGCATAATT CAAAGTAACC AGAGTAGTTT TTCTACTCTG TATCGTTTAG TCGATATGGT TATTATTACT TTGGTGTATT TTCTTGTGTT GTTGTATCAA GGGCTAGCCA TCAACACTGC TGGCTTATTG TTACTCTTTG TCAGCATCAT TTCTTATATG TTGTGTGCAG AGGCTGTAGA TCTCTATCGC TCTTGGCGAA CGGCTTCCAA TACACTAATG ATAAAATGGG CCATGGTCGC TTGGGGCGTT TCCTCTCTTG TTACGACCAC CTTCGCCTTT ATTTTCCCCG ATGCTATTGC TGCATCAAAC TTCGTTATTG TAAGTTGGTT AGTCTTGTGT GCCCCGACAC TGGTGAGCTG GCGCGTGGCG TTTCGCGAAA TATTATTTAG GCACCGTAAA AAAGGCCACA ATACGCGCAG AGCGATTGTG ATTGGTGCGA CGCAATCGGG ATATAATCTT GCCAACCAAA TAATGGAGAA TGATCAACTA GGGATCATTT TCAAAGGCAT GTACGATGAC CGAGCTCCGG CTCGTATCCC CCATGAAATT CAGCACCAAG TGATGGGCAG CATTCAAGAT GCCATTAAAC TAGCCAAAGA AGGCGAGGTA GATTACATCT ATATCGCCAT GCCCATGAGC GCCGAGAAGC GTATCATGCA GATTTTAAAC ATGTGCAGTG ACTCTACCGC TACTGTCTAT ATCATCCCTA ACTTCTTTAT GTATAACCTG TTGAATGCAC GCTGGCAGAG TGTTGGTTCG ATTCAAACTT TGAGCGTATT TGATACGCCC TTTCAAGGTG CAGGCGATAT CACTAAGCGT TTAGAAGATA TTGTTGTGTC GTCATTAATT TTGACGATGA TCGCCATCCC CATGCTATTT ATTGCCATGG CAGTGAAATT AACCTCTAAA GGCCCTGTGA TTTTCAAGCA AAACCGATAC GGTTTAGATG GCAAGAAAAT CAAAGTGTAT AAGTTTCGCT CCATGACGGT GCAAGACAAC GGCGATAAAG TGCAGCAAGC GACCAAAAAT GATGCACGCA TTACGCCCCT TGGTGCCTTT TTACGTAAAA CTTCGTTGGA TGAATTGCCA CAGTTTATCA ACGTGTTACA AGGTCGCATG TCAGTTGTTG GGCCGCGCCC TCATGCGGTT GCGCACAATG AAGAATATCG TAAGTTGATT GAAGGCTATA TGCTGCGTCA TAAAGTACGC CCTGGCATCA CTGGCTGGGC GCAAATCAAC GGCTTTCGCG GTGAGACTGA AACCATCAAC AAGATGATTA AGCGCGTAGA ATATGATTTG GATTATATAC ACCGCTGGTC AGTGTGGATG GATATTCGAA TTATACTCGC CACCGTTACC CGTGGGTTTA TTAATAAAAA TGCTTATTAA
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Protein sequence | MHNKSPGGII QSNQSSFSTL YRLVDMVIIT LVYFLVLLYQ GLAINTAGLL LLFVSIISYM LCAEAVDLYR SWRTASNTLM IKWAMVAWGV SSLVTTTFAF IFPDAIAASN FVIVSWLVLC APTLVSWRVA FREILFRHRK KGHNTRRAIV IGATQSGYNL ANQIMENDQL GIIFKGMYDD RAPARIPHEI QHQVMGSIQD AIKLAKEGEV DYIYIAMPMS AEKRIMQILN MCSDSTATVY IIPNFFMYNL LNARWQSVGS IQTLSVFDTP FQGAGDITKR LEDIVVSSLI LTMIAIPMLF IAMAVKLTSK GPVIFKQNRY GLDGKKIKVY KFRSMTVQDN GDKVQQATKN DARITPLGAF LRKTSLDELP QFINVLQGRM SVVGPRPHAV AHNEEYRKLI EGYMLRHKVR PGITGWAQIN GFRGETETIN KMIKRVEYDL DYIHRWSVWM DIRIILATVT RGFINKNAY
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