Gene Patl_1067 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1067 
Symbol 
ID4172853 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1277044 
End bp1278651 
Gene Length1608 bp 
Protein Length535 aa 
Translation table11 
GC content46% 
IMG OID638054073 
ProductFAD-dependent pyridine nucleotide-disulphide oxidoreductase 
Protein accessionYP_660647 
Protein GI109897392 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG3634] Alkyl hydroperoxide reductase, large subunit 
TIGRFAM ID[TIGR03140] alkyl hydroperoxide reductase, F subunit 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTAGACG CAAAATTAAA AGGCCAATTG GCGACTTATT TAGAAAATTT AACTTCACCC 
GTGGAGTTAC GCATTGCTGT TGATGAGCAA CATCAAGCTA AGAAATCCGC AGAACTCACA
GATTTGGCGA ATGAAATAGC TGCGTTATCG CCGTTGGTCA GCGTTGTGGC GCAAAGTAAA
AGCGACATTC GAAAACCGTC GATGGAAGTG GTTTCCATAA CAAATAGCAC CTCAATTACT
TTTGCTGGTG TACCTATGGG CCATGAATTC ACTTCATTAA TACTCGCGTT ATTAAACAGT
GGCGGCCACC CGGTGAAAAT CAGCGAGCAG CAAGTAGCTG AAATAAAGTC ACTTTCTGGT
TCATACCAAT TTGAGACATA CGTTTCGTTG AGCTGTCAGA CATGCCCAGG GGTAGTGCAA
GCCTTAAACG TGTTGTCTGT TATCAATCCA AATATTACTA ATACCATGAT TGATGGTTCA
CTGTTTCAAG AAGAAGTGAC ACAGCGCAAT ATCATGTCAG TACCAAGCGT GTATTTAAAT
GGCGAGCTGT TTACCCAAGG GGCAGTGACC ATAGAGAAAA TTTTAAGCAA AATTGACCCT
CAGGCAGATG CCAAGCAAGC CCAGTCACTC AATGACAAAG CACCTTATGA CATGCTCATT
GTAGGCGGCG GTCCAGCGGG TGCAGCCGCT GCGATTTACG CAGCAAGAAA AGGCATTCGT
ACTGGTATTG TGGCCGAAAA GTTTGGTGGG CAAGTGACTG ACACCATGGC TATCGAAAAC
TTTATTTCGG TTAAAGCGAC TGACGGCCCT AAACTTGTGT CAGGCCTTGA GCAACACGTG
AAAGATTATG ATGTGGACAT CATGACGAAT AATAAAGCCG TGAAGTTAAC AAAAGACGGC
TTGCTCAATA TCGAGCTTGA GAATGGCGCA TTGTTATCCA GTAAAACAGT GATGTTAGCC
ACCGGAGCAA GATGGCGTGA AATGAACGTG CCAGGCGAGC AACAATACCG CGGGGCAGGC
GTTGCTTATT GCCCACACTG TGATGGGCCG CTATTTAAAG GCAAACGCGT CGCGGTGATT
GGTGGCGGTA ATTCAGGTAT CGAAGCGGCT CTTGATTTAG CCAATATCGT TGAACATGTC
ACCGTACTCG AATTTGATAG CAAGTTGCGT GCTGATGAAG TACTTCAGCG CAAAGCAAAA
GCGGCTAACA ATATCGACAT TATCTTAAAT GCTATGACGA CAGAAGTGCA AGGCGATGGC
AAACGTGTTA CCGGTCTAGC CTATCAAGAC CGAGCCAGCC AAGAAAGTCA TCAAGTCGAA
TTGGCTGGCA TTTTTGTGCA AATTGGTTTG GTGCCGAACA CCGAATGGTT AAAAGGTGAT
ATTGCCTTAA CTGCTCGAGG TGAAATAGAA GTAGGCCAAC GTGGTGAAAC CTCGATTGAA
GGTGTATTTG CCGCAGGTGA TGTAACGACT TCGCCTTACA AGCAAATTAT CATCGCCATG
GGTGATGGAG CAAATGCTGC ACTCGGTGCG TTTGATTACT TACTTAGAGC GCCGGCTGAC
GAAAATACCC CGTCAGTTGA AAGTAACATC GGTGAAAAGG CAGCTTGA
 
Protein sequence
MLDAKLKGQL ATYLENLTSP VELRIAVDEQ HQAKKSAELT DLANEIAALS PLVSVVAQSK 
SDIRKPSMEV VSITNSTSIT FAGVPMGHEF TSLILALLNS GGHPVKISEQ QVAEIKSLSG
SYQFETYVSL SCQTCPGVVQ ALNVLSVINP NITNTMIDGS LFQEEVTQRN IMSVPSVYLN
GELFTQGAVT IEKILSKIDP QADAKQAQSL NDKAPYDMLI VGGGPAGAAA AIYAARKGIR
TGIVAEKFGG QVTDTMAIEN FISVKATDGP KLVSGLEQHV KDYDVDIMTN NKAVKLTKDG
LLNIELENGA LLSSKTVMLA TGARWREMNV PGEQQYRGAG VAYCPHCDGP LFKGKRVAVI
GGGNSGIEAA LDLANIVEHV TVLEFDSKLR ADEVLQRKAK AANNIDIILN AMTTEVQGDG
KRVTGLAYQD RASQESHQVE LAGIFVQIGL VPNTEWLKGD IALTARGEIE VGQRGETSIE
GVFAAGDVTT SPYKQIIIAM GDGANAALGA FDYLLRAPAD ENTPSVESNI GEKAA