| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1033 |
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| Symbol | |
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| ID | 4172819 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1226869 |
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| End bp | 1231380 |
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| Gene Length | 4512 bp |
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| Protein Length | 1503 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054039 |
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| Product | endonuclease I |
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| Protein accession | YP_660613 |
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| Protein GI | 109897358 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2374] Predicted extracellular nuclease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.8795 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTAA AATACCCAGC TCTGCTGGCG CTATTAAGCG CGTCCGCAGT GCAAGCAGGG
GAGCTTGTAA TATCTGGTGT TTTTGACGGC CCACTTCCAG GTGGACTTCC AAAAGGCATT
GAATTATTTG TTACCCAAGA TATTGCCGAT TTAAGTACAT GCGGTGTAGG TTCGGCTAAT
AACGGCGGCG GCACTGATAA TCAAGAATTC ACTTTTCCCG CTAGAGCAGC AACTGCAGGT
TCCTACATTT ACCTAGCGTC GGAATCACCT CAATTCGCTG CTTTTTTCGG TTTTGAACCG
ACTTACACTA ATAGTGCCGC CAACATCAAT GGCGATGATG CCATAGAGTT GTTCTGTGAC
GGTGCCGTGG TAGATGTGTT CGGTGATATT AACGTCGATG GCAATGGTGA ACCTTGGGAG
TACCTAGACG GTTGGGCGTA TCGTAATATC GATACTGGGC CTGATGGTAA CTCCTTTCTA
TTAGGTAACT GGACATTTAG CGGCCCCAAT GCATTTGACG GGGAAAGCAA CAATGCAACA
GCAGCCGCTC CATTTCCTTT AAAGGCATTC GCTGATGAAA TTGACGGTGG CGATACAGGC
GGTGGCTCTG GTGGTGCAAC AGACCCGAGC GCTCCATGTT TTAACTGCCC AGCGCTAGAT
CCTATTGCTG ATGCAAGTAC GTTTGATAGT GAAAGTTATT ATGCAGCTGT CAGCGCAGAA
ATAAACGCAA ACTCGCCTGC TGCAACGATT AAAAGTGCTA TTACCAGCGC TATTACGCAA
GGGCAAAAGA ATTTAACGTA TTCAGAAGTG TGGAGCGCAT TAACCCACAC AGATGAAGAT
CCAAATAACC CTGATAACGT GATCCTTTGG TACAAAGGTA CATCAATCGC GAAAAGCAGT
AATGGTAGCG GCTCACAGAG CAGTGATCCT GACAACTGGA ATCGTGAACA TAGCTGGGCA
AAAAGCCATG GGTTTCCAAA TGAATCCCAA GAAGCTTACA CCGATATTCA TCATTTACGG
CCTACCGATA TTTCGGTTAA TTCATCGCGT GGCAATTTAG ATTTCGATAA CAGCGATAAT
GCTTTATCTG AAGCCCCCAG CAATCGTGTT GATGATGATT CGTTTGAACC ACGTGATGCC
GTGAAAGGCG ATGTTGCGCG CATGATGTTC TATATGGACA CGCGTTACGA AGGTTTTGGT
GACTCGACAC CCGATCTTGT TTTGGTAGAC CGCTTAACCT CAACCGGTGC TCCAGAGTTA
GGGCGTTTGT GTCGCTTAGT GGAGTGGCAT AATGCTGATC CGGTAGATGC AACGGAACAA
ACACGTAACG ACACGATTTA CGAGTACCAA GGTAACCGTA ATCCGTTTAT TGACCACCCT
GAGTGGGTTG ATATTTTATA TCAAACACCA GCATGTGGTA CCGACGGCGG TGATACTGGT
GGTGAAGACG ATGGCGACAC GGGTGGAGAC ACTGGCGGCT CGGCCTCTGC AGGCGATATC
GTCATCTCAG GTGTGATTGA TGGACCTCTT TCTGGTGGCA CACCTAAAGC GATTGAGTTC
TTTGTGCGTA ATGATATTGC TGATTTAAGC ACATGTGGTT TTGGCTCTGC TAATAACGGC
GGAGGCTCTG ACGGCCAAGA ATATACTTTC TCTGGCTCTG CAGCTGCAGG TGATTTTATT
TATATCGCCT CTGAAGGCAG TAATTTCGAT GCTTATTTTG GATTTTCTCC AACGGATACG
GCTGGCGCGG CAGGAATAAA CGGTGATGAT GCGATTGAAT TGTTCTGTGA CGGAGACGTC
GTTGACGTAT TCGGTGATAT CAATACAGAC GGCACCGGTG AACCATGGGA CCATGTGGAT
GGTTGGGCAT ATCGCGTTGC TAGTACAGGT CCTGACGGCT CTACCTTTAC GCTTAGCAAT
TGGGTGTTCA GTGGGGCTAA TGCACTAGAT GGCGAAGCAA CGAATGCCAC TGCGGCTAGT
CAATTTCCAA TCGGTTCATA CACCAGCAAA GAAGTCCTTC TAATATCTGG TGTATTTGAC
GGCCCTCTAT CGGGCGGAAC GCCCAAAGCG ATTGAATTCT ACGCGGTAAC CGACATACAA
GATTTAAGCG TATTTGGTTT TGGCTCTGCA AATAACGGTG GTGGAACAGA CGGTCAAGAA
TTTGCGTTTT CTGGCTCTGT CTCTGCCGGT GAATATTTCT ATGTCGCTAC GGAAACATCA
GGTTTTAATG CTTACTTTGG GTTTGATCCA ACATTCATCT CAGGTGCAGC GGCTATTAAC
GGTGATGACG CCATTGAATT GTTCCACGAG GGGGAAGTGG TTGACGTGTT CGGAGATATT
AATGTCGACG GCACTGGCCA GCCTTGGGAT TACTTAGATG GTTGGGCTTA CCGTGTGGCC
GATTCAGGCC CAGATGGCAC TACCTTTGTG TTGGCTAACT GGACATTCAG CGGCACCAAT
GTACTTGATG GTTCAAGCAA TAATGCGACT GTGTCAACCC CTTTCCCCCT TGGCAGCTTT
GCTGGCAGCG GAAATAACGA CGGCGGCGAC AATGGCGGTG GTGAAACACC TCTATTAGGT
ATGTGTGCAG ACCCAGCAAC CTTAATTAGC GCAATTCAAG GTTCTACGGA TATTTCCCCA
GCTGTTGGCG AAACTCATAT CATTGAAGGT ATTGTTACCG CGAGTTTCCC AAATCTTAGT
GGTTACTTTG TACAAGAAGA AGATAGCGAC CAAGATGCAG ACAGTGCCAC ATCAGAAGGT
GTATTTGTTT ACAGTCCATC GTTAGCATTA CCCGAAGCCG GAAAAGTGGT GCGCGTTTTA
GGTGACGTAG CGGAAGCATT TAACAAAACG CAACTTGTTG TGTCTGAGAT TAACCCTGAC
TGCGGAACTG GTTCAGTTAC AGCCACTGCA TTGACATTAC CGTTTGATTC TGTTGATTCG
ATGGAAGCGC TAGAGGGCAT GTTAGTAGCC AGTTCTGGTG AGCTGACAGT GACTGACACA
TACAGTCTTG GGCGATACGG TGAAGTCTTA TTGTCCAATG GGCGTTTGTT TATACCTACC
AACCTGTATA CAGCTGGTAG TCCTGAAGCG ATTGCGTTAG CGGCTCAGAA TGAGCTCAAT
CAGATTACGT TAGATGATGG TGTAAATGGC CAGAACCCAG ACGTTGTTGT TTATCCTGCT
GGTGGTTTGT CTGCCAGTAA TCCGCTTCGT GGCGGTGACA CGGTCACTGC GTTAACAGGC
GTAATGGATT TTAGCTTCAG TCTTTATCGG ATTATTCCGG TTGAACAGCC GACTATTGTG
GCAAGCAATC CAAGAACTGA CGCGCCTGAT CTTGAATTAG GTAACCTTAA AGTGGCAAGC
TTGAACGTAT TGAATTACTT CAACACGTTA GATGTTAGCC CGAACGTGTG TGGCCCTTCT
AATCTAGAAT GTCGTGGTGC TGATAGCGAA ATAGAGCTTG AGCGTCAACG CGCTAAAACC
CTAGCTGCTT TACTTGCTAT GGACGCAGAT ATCGTAGGCT TGATGGAAGT CGAGAATAAC
GGATTTGGGG CAAACAGCGC CGTTGGAGAC TTAGTTTCTG GTTTAAACGA TGTATTAGGT
GCTAACACCT ATGCAACAGT TGATGCGGGG AGCGCTATCG GCACTGATGC GATCACGGTT
GCGTTAATAT ACAAACCCGC GGTGGTTTCA GTCGTTGGAC AACCGGCCAT ATTAGACAGC
AGTAATTCTA TTTCTGATGA CGATGGTCCT TTATTCTTAG ACACCAAGAA CCGCCCAGCG
TTAAATCAAA AGTTTGCTTT AGTTGCAAAC AATGAAGAGC TGGTTGTCAG CGTAAATCAT
TTCAAATCCA AAGGATCAAG TTGTGGCGCT GGCGATGACG ATACAACGAC AGGGCAAGGT
AACTGTAACC TGACTCGTAC GAGAGCCGCT GAAGCATTAA CGACGTTCTT GTCACAACAG
TTCTCTGACA CCCCTACGTT GATTATTGGT GATTTAAACT CTTATGCGAT GGAAGAGCCT
ATCCTTAAAA TTTTGCAGCA GGGTTACACT GATCTTGCCA ATAAATTTGG TGGCGATGAA
GCATACTCTT ACTCATTTGG TGGTGAATTT GGTTACCTAG ACCATGCGCT AGCTAGCGCA
ACATTAGTTG ACCAAATTGT TGATACCACT GAATGGCACA TCAACGCTGA TGAACCCATA
GTCTTCGATT ATAACGTTGA GTTTAAGTCT GATCAGCAGC TGATTGATTA CTATGCGCCT
GACGCGTATC GCATGTCAGA TCACGACCCT GTGGTGATTT CGCTACTACT AGAATCAGAG
GTACAAGTAG TAGAGGGTGA CTACGACGGC GATGGTGATG TGGATATGAT GGATATTCGA
GCACTGACTA GAGCAATTCA ACTTCGTCAA ACTATAGACA ACAGCTTCGA TTTTAACGAA
GATGGGCAAG TAAGTTATAC AGATGTAAGA TTATTGCAAC GTATGTGTAC TCGCACACGT
TGCGCTATTT AA
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| Protein sequence | MKLKYPALLA LLSASAVQAG ELVISGVFDG PLPGGLPKGI ELFVTQDIAD LSTCGVGSAN
NGGGTDNQEF TFPARAATAG SYIYLASESP QFAAFFGFEP TYTNSAANIN GDDAIELFCD
GAVVDVFGDI NVDGNGEPWE YLDGWAYRNI DTGPDGNSFL LGNWTFSGPN AFDGESNNAT
AAAPFPLKAF ADEIDGGDTG GGSGGATDPS APCFNCPALD PIADASTFDS ESYYAAVSAE
INANSPAATI KSAITSAITQ GQKNLTYSEV WSALTHTDED PNNPDNVILW YKGTSIAKSS
NGSGSQSSDP DNWNREHSWA KSHGFPNESQ EAYTDIHHLR PTDISVNSSR GNLDFDNSDN
ALSEAPSNRV DDDSFEPRDA VKGDVARMMF YMDTRYEGFG DSTPDLVLVD RLTSTGAPEL
GRLCRLVEWH NADPVDATEQ TRNDTIYEYQ GNRNPFIDHP EWVDILYQTP ACGTDGGDTG
GEDDGDTGGD TGGSASAGDI VISGVIDGPL SGGTPKAIEF FVRNDIADLS TCGFGSANNG
GGSDGQEYTF SGSAAAGDFI YIASEGSNFD AYFGFSPTDT AGAAGINGDD AIELFCDGDV
VDVFGDINTD GTGEPWDHVD GWAYRVASTG PDGSTFTLSN WVFSGANALD GEATNATAAS
QFPIGSYTSK EVLLISGVFD GPLSGGTPKA IEFYAVTDIQ DLSVFGFGSA NNGGGTDGQE
FAFSGSVSAG EYFYVATETS GFNAYFGFDP TFISGAAAIN GDDAIELFHE GEVVDVFGDI
NVDGTGQPWD YLDGWAYRVA DSGPDGTTFV LANWTFSGTN VLDGSSNNAT VSTPFPLGSF
AGSGNNDGGD NGGGETPLLG MCADPATLIS AIQGSTDISP AVGETHIIEG IVTASFPNLS
GYFVQEEDSD QDADSATSEG VFVYSPSLAL PEAGKVVRVL GDVAEAFNKT QLVVSEINPD
CGTGSVTATA LTLPFDSVDS MEALEGMLVA SSGELTVTDT YSLGRYGEVL LSNGRLFIPT
NLYTAGSPEA IALAAQNELN QITLDDGVNG QNPDVVVYPA GGLSASNPLR GGDTVTALTG
VMDFSFSLYR IIPVEQPTIV ASNPRTDAPD LELGNLKVAS LNVLNYFNTL DVSPNVCGPS
NLECRGADSE IELERQRAKT LAALLAMDAD IVGLMEVENN GFGANSAVGD LVSGLNDVLG
ANTYATVDAG SAIGTDAITV ALIYKPAVVS VVGQPAILDS SNSISDDDGP LFLDTKNRPA
LNQKFALVAN NEELVVSVNH FKSKGSSCGA GDDDTTTGQG NCNLTRTRAA EALTTFLSQQ
FSDTPTLIIG DLNSYAMEEP ILKILQQGYT DLANKFGGDE AYSYSFGGEF GYLDHALASA
TLVDQIVDTT EWHINADEPI VFDYNVEFKS DQQLIDYYAP DAYRMSDHDP VVISLLLESE
VQVVEGDYDG DGDVDMMDIR ALTRAIQLRQ TIDNSFDFNE DGQVSYTDVR LLQRMCTRTR
CAI
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