| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1027 |
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| Symbol | |
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| ID | 4173306 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1220581 |
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| End bp | 1221660 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638054033 |
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| Product | signal transduction histidine kinase, nitrogen specific, NtrB |
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| Protein accession | YP_660607 |
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| Protein GI | 109897352 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3852] Signal transduction histidine kinase, nitrogen specific |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.296373 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGTTCA AAATGAAAAC CGACACCTTG CTGGATAACT TATCGACTGC GGTTATCCTG
TTGAATGAAA AACTTGCCAT CGTAGAAGCA AATCACGCTG CTCAGGCAAT GTTTGAGCGC
AGTTTAAATC TGTTGATAGA TTGCCCCATT AAGCAACTTA TTGCTGACTC AAGTCTAGAT
TTCATTCGTT TTACTCAAGA CATGCAACAC GGGGAAGGTT ATTCCGACGG TGATGTACAA
ATCAGCTTTG CCGATGGTCG CCACACTCAC GCCGATGTAA CCGTCACCTG TTTACATACA
GCAGAAGGAG TAACGCTACT ATTAGAAGTT CGTTTAATTG AGCAGCAAAA GAAGATCAGC
CAAGAAACAC AGCAGTGGGC GCAGCAACAG GCCGCTCGTG AGTTAATCCG TGGGCTCGCC
CACGAGATAA AGAACCCTCT AGGGGGCATT CGCGGTGCTG CGCAATTACT TGAAAAAGAG
CTACCGTCGG CAGACTTGAA AGAGTTCACT ACCATGATTA TTGAGCAATC TGATCGCTTA
CGTAATTTGG TGGATCGTTT GCTTGGCCCC AATTCCCGGC CTAATTTTCA AAGTCACAAT
ATCCATCGTG TATTGGAGAA AGTCATCACT TTGGTTCAAC TGGATCTTAG TCACGATATT
GTGATTGATC GTGACTACGA CCCAAGTATT CCTGAGAGCA TTATTGACCA AGACATGGTG
CAGCAGGCCG TGCTTAATAT TATGCGTAAT AGCGTTCAGG CCTTGATGCA AAGTGAGCAA
AGTGAGGGGA AAATTAACGT GGTCACACGA ATTGAACGCC AAGTCACAAT CCACGGTGAA
CGACACCCAT TGGCGATGAA AATCAGCTTG GTTGATAACG GCCCAGGGAT ACCTAGCGAG
TTAAAAGACA CTTTGTTTTA TCCCATGGTT ACCGGCAAAA AAGAAGGCAC GGGGCTTGGG
TTGTCGATCG CACAAACTTT GATAGACCAC CACAAAGGCA AGATTGACGT AGAAAGTTGG
TCAGGCCATA CGGAATTTAC TTTATATATT CCTATTAACA GGAAGGAACT TAATTCATGA
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| Protein sequence | MPFKMKTDTL LDNLSTAVIL LNEKLAIVEA NHAAQAMFER SLNLLIDCPI KQLIADSSLD
FIRFTQDMQH GEGYSDGDVQ ISFADGRHTH ADVTVTCLHT AEGVTLLLEV RLIEQQKKIS
QETQQWAQQQ AARELIRGLA HEIKNPLGGI RGAAQLLEKE LPSADLKEFT TMIIEQSDRL
RNLVDRLLGP NSRPNFQSHN IHRVLEKVIT LVQLDLSHDI VIDRDYDPSI PESIIDQDMV
QQAVLNIMRN SVQALMQSEQ SEGKINVVTR IERQVTIHGE RHPLAMKISL VDNGPGIPSE
LKDTLFYPMV TGKKEGTGLG LSIAQTLIDH HKGKIDVESW SGHTEFTLYI PINRKELNS
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