Gene Patl_1008 details

Gene Information

• Locus tag: Patl_1008
• Symbol: rplO
• ID: 4171984
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 1195691
• End bp: 1196125
• Gene Length: 435 bp
• Protein Length: 144 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 638054009
• Product: 50S ribosomal protein L15
• Protein accession: YP_660588
• Protein GI: 109897333
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0200] Ribosomal protein L15
• TIGRFAM ID: [TIGR01071] ribosomal protein L15, bacterial/organelle

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00101008
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCATTTAA ATACTCTTGC TCCTGCACCA GGAGCAAAAA AATCTAGTAA GCGCGTTGGA 
CGCGGTATGG GTTCAGGTCT TGGAAAAACT GGTGGCCGTG GTCACAAAGG TCAAAAGTCT 
CGCTCTGGCG GTTCTGTAAA GCCTGGTTTT GAAGGCGGAC AAATGCCAAT TCAGCGTCGT 
CTACCTAAGT TCGGTTTCAC ATCACGTAAA TCTTTGGTTT CTGACCAAGT GACGTTGAGT 
GAAATTGCAA AGGTAGAGGG TGAAGTGGTT TCACTTGAAA CTTTAAAAGC AGCAGGTCTT 
GTTAAGAAAG AAATGCTGTT TGTTAAAGTG CTTAAGAGCG GTGAAATTTC ACGAGCTGTT 
ACTATCAATG GTTTGAAGGT TACAAAAGGC GCGCGCGAAG CAATCGAAGC GGCCGGCGGT 
AAGGTAGAGG AATAA 

 

Protein sequence

MHLNTLAPAP GAKKSSKRVG RGMGSGLGKT GGRGHKGQKS RSGGSVKPGF EGGQMPIQRR 
LPKFGFTSRK SLVSDQVTLS EIAKVEGEVV SLETLKAAGL VKKEMLFVKV LKSGEISRAV 
TINGLKVTKG AREAIEAAGG KVEE