| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1007 |
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| Symbol | rpmD |
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| ID | 4171983 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1195499 |
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| End bp | 1195687 |
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| Gene Length | 189 bp |
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| Protein Length | 62 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638054008 |
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| Product | 50S ribosomal protein L30 |
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| Protein accession | YP_660587 |
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| Protein GI | 109897332 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1841] Ribosomal protein L30/L7E |
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| TIGRFAM ID | [TIGR01308] ribosomal protein L30, bacterial/organelle |
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| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00128687 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGAACATGG CTAAGATGAT AAAAGTTAAG CAAACCAAAA GCGCTATCGG TCGCCTTCCA
AAGCATAAGG CAACTCTTAC GGGTCTAGGT TTACGTCGCA TCGGTCATGT TCGTGAACTC
GAAGATACCC CTTCTGTTCG TGGCATGATC AACCGTGTAT TTTACATGGT TGAAGTAGTG
GAGGAGTAA
|
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| Protein sequence | MNMAKMIKVK QTKSAIGRLP KHKATLTGLG LRRIGHVREL EDTPSVRGMI NRVFYMVEVV
EE
|
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| |