Gene Patl_1006 details

Gene Information

• Locus tag: Patl_1006
• Symbol: rpsE
• ID: 4171982
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 1194995
• End bp: 1195498
• Gene Length: 504 bp
• Protein Length: 167 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 638054007
• Product: 30S ribosomal protein S5
• Protein accession: YP_660586
• Protein GI: 109897331
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.00241211
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTAAAG TAGAAGTTCA ACAACAGGGT GACCTGTTAG AAAAACTAAT TGCTGTAAAC 
CGTGTATCTA AAGTAGTTAA AGGTGGTCGT ATCTTTAGCT TTACTGCTTT GACAGTAGTA 
GGTGACGGGA ATGGTCGTGT TGGTTTTGGT TACGGTAAAG CACGTGAAGT GCCTGCTGCA 
ATTCAAAAAG CTATGGAAAA AGCGCGCCGC AATCTTGTGG ACGTGGATCT AAATGGCAAC 
ACGCTACAGC ATCCAATTAA AGGTCGTCAT TCAGGCTCAA AAGTCTACAT GCAACCTGCA 
TCAGAAGGTA CTGGTATTAT TGCCGGTGGT GCAATGCGTG CGGTACTTGA AGTCGCTGGC 
GTTCAAAACG TACTTTCAAA ATGTTACGGA TCTACCAATC CAATTAACGT TGTGCGTGCA 
ACTATCAATG CGTTGACAGA AATGACTTCG CCTGATCAAG TTGCTGCTAA ACGTGGATTG 
TCTGTAACGC AGATTTTGGG GTAA 

 

Protein sequence

MAKVEVQQQG DLLEKLIAVN RVSKVVKGGR IFSFTALTVV GDGNGRVGFG YGKAREVPAA 
IQKAMEKARR NLVDVDLNGN TLQHPIKGRH SGSKVYMQPA SEGTGIIAGG AMRAVLEVAG 
VQNVLSKCYG STNPINVVRA TINALTEMTS PDQVAAKRGL SVTQILG