Gene Patl_1000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1000 
SymbolrplX 
ID4173502 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1192485 
End bp1192799 
Gene Length315 bp 
Protein Length104 aa 
Translation table11 
GC content41% 
IMG OID638054001 
Product50S ribosomal protein L24 
Protein accessionYP_660580 
Protein GI109897325 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0198] Ribosomal protein L24 
TIGRFAM ID[TIGR01079] ribosomal protein L24, bacterial/organelle 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00244473 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTAGAA AAATTCGTCG TGATGATGAA ATCATCGTTT TGGCAGGTAA AGACAAAGGA 
AAACTAGGCA AAGTGCTTAA AGTTCTTCCA GCGGCTGACC GCTTAATCGT TGAAGGTGTG
AACTTGGTGA AGAAGCATCA GAAACCTAAC CCTCAATTGG GTGTTACTGG TGGCGTTATT
GAGAAAGAAG CATCAATTCA CGTGTCAAAT GTAGCGATTG TTAACCCTAA AACGGGTAAA
GCAGATCGCA TAGGTTTCCG TTTTGAAGAC GACAAAAAAG TTCGTTTCTT CAAATCTGAC
GGTGAACTGG TTTAA
 
Protein sequence
MARKIRRDDE IIVLAGKDKG KLGKVLKVLP AADRLIVEGV NLVKKHQKPN PQLGVTGGVI 
EKEASIHVSN VAIVNPKTGK ADRIGFRFED DKKVRFFKSD GELV