Gene Patl_0995 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0995 
Symbol 
ID4173497 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1187513 
End bp1188253 
Gene Length741 bp 
Protein Length246 aa 
Translation table11 
GC content47% 
IMG OID638053996 
Product23S rRNA (guanosine-2'-O-)-methyltransferase 
Protein accessionYP_660575 
Protein GI109897320 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0566] rRNA methylases 
TIGRFAM ID[TIGR00186] rRNA methylase, putative, group 3 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTCAAC ATGAGTGGTT GTATGGTATT CATGCATTAG AAGCAGTGAT AGAGCGTGAG 
CCAGAGCGTT TGATTGAGTT GTTTGTCCTT AAAGGTCGTG ACGACAAACC GATTAATTCA
ATCATCAATC ATGCGCGTAA GTTTGGTATT GCGGTGCAAT TTTGCCAGCG CAAAACCTTA
GACGATAAAG TCAATGGTGA ACAGCACCAA GGTGTTGTAG CGAAAGCGAA GCCCGGTAAA
CAGTTTAACG AAAATGATTT AGACGAAATC ATTAAAAAAA GCGCCACGCC TTTTTTGTTA
ATACTCGATG GTGTAACTGA TCCTCATAAT TTAGGTGCGT GTTTGCGTAC CGCCGATGCA
GCAGGTATTG ACGCTATTGT GGTGCCCAAA GACAACTCGG TAGCATTAAC GCCAGTGGTG
AGGAAAGTCG CTTGCGGTGC AGCTGATTTG ATCCCCCTTA TACAGGTGAC TAACCTGGCA
CGTACTTTAC GAGAGATTAA AGATGCAGGC GTATGGGTGG TGGGTACTGC AGGTGAAGCA
ACCCAGAGTA TATACGATTG TAAGATGCAA GGACCGATAG CGCTGGTGAT GGGCGCCGAA
GGCAAAGGAA TGCGCAGGCT GACCCGAGAA CATTGCGACG AGCTAATAAA GCTGCCCATG
GCAGGTTCGG TTTCTAGCTT GAATGTATCG GTGGCGACCG GTATTTGCTT GTATGAAATT
GTACGTCAGC GCACTAGCTA G
 
Protein sequence
MAQHEWLYGI HALEAVIERE PERLIELFVL KGRDDKPINS IINHARKFGI AVQFCQRKTL 
DDKVNGEQHQ GVVAKAKPGK QFNENDLDEI IKKSATPFLL ILDGVTDPHN LGACLRTADA
AGIDAIVVPK DNSVALTPVV RKVACGAADL IPLIQVTNLA RTLREIKDAG VWVVGTAGEA
TQSIYDCKMQ GPIALVMGAE GKGMRRLTRE HCDELIKLPM AGSVSSLNVS VATGICLYEI
VRQRTS