Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0906 |
Symbol | |
ID | 4171960 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 1076474 |
End bp | 1077295 |
Gene Length | 822 bp |
Protein Length | 273 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 638053907 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_660486 |
Protein GI | 109897231 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.127379 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAACT TAACGTTCAA GAACAAAACG GTACTAATCA CTGGAGCATC TTCTGGTATT GGTAAAGAGT TCGCCCATCA ACTTGCCAGC CAGAATGCAA ACTTAATCAT TACAGCCAGA ACAAACAGTG TTCTTGTTGA GGTAGCGAAA GAATTACAGT CTAAAAATTC GAGTATTTGG GTAAAAACAA TAGATGTTGA TCTTAGTGAA CCTGGTGGTG CCCAATTGCT ATTTTCAAAA ATTGACGACA TGGATTTACC AGTAAATTTT TTAATAAATA ATGCCGGCTT TGGAAAGTTT TGTGAATTTT CAGACGAAAC CTTTTCAAAC TATCATAAAA TGATGATGCT CAATATGCAT GCCCTTGTCG AGCTTACTCA CTTATTTCTC CCGCATATGA AAAAGCAAAA CAGTGGTGGT ATTATTAATG TTGGCTCTAC AGGATCTTTT CAACCATTAC CTTACCAAGC AGTCTATGGC GCCTGTAAGG CTTTCGTATT GAACTTTTCA GAAGCTTTAT CAGGTGAATT GTTAGATACA AACATTCGAG TTATGGCCTT ATGCCCTGGT GTAACCGAAT CTAACTTTAT GAAAAGAGCA AATGCAGATA CATCAAAAAT GAAGTTTTCA TCAACAGGAA AAGTTGTAAA CAATGCATTA AGTGCATATG GGAAAAACCG TGTATACGTA GTATCTGGAT GCGTTAATTA TTTAACATCA TTAGTACCTC GTTTTGTTTC ACGGAAAACA GCAGTAATAA CTGTTGCCAA CATGTTCAAA AATAGTGTCT TAAATAATAT CGCCCAGCGA AAAAACGCAT AA
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Protein sequence | MKNLTFKNKT VLITGASSGI GKEFAHQLAS QNANLIITAR TNSVLVEVAK ELQSKNSSIW VKTIDVDLSE PGGAQLLFSK IDDMDLPVNF LINNAGFGKF CEFSDETFSN YHKMMMLNMH ALVELTHLFL PHMKKQNSGG IINVGSTGSF QPLPYQAVYG ACKAFVLNFS EALSGELLDT NIRVMALCPG VTESNFMKRA NADTSKMKFS STGKVVNNAL SAYGKNRVYV VSGCVNYLTS LVPRFVSRKT AVITVANMFK NSVLNNIAQR KNA
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