Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0801 |
Symbol | |
ID | 4173114 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 924263 |
End bp | 925687 |
Gene Length | 1425 bp |
Protein Length | 474 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638053804 |
Product | L-fucose transporter |
Protein accession | YP_660383 |
Protein GI | 109897128 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0738] Fucose permease |
TIGRFAM ID | [TIGR00885] L-fucose:H+ symporter permease |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCAAGCG GGATGGAGCA GACAGCCGAA GCGGTATCAG TACAGAAAAA CCAGGGGAGC AAACCCCAAA TATTAGAAGC AAAATATATT GTCCCATTCC TGTTGGTTGC CTCGCTATTT CCGTTATGGG GCTTTGCAAA TGACGTGACT AACCCATTAG TAAAAGCGTT CAAAGATATT TTCATGATTT CTAACGCGCA AAGTAGTTTG GTGCAATTTG CCTTCTACTT GGGCTACGGA GTGATGGCAA TACCTGCGGC AATTTTTATT CGTCGATTCT CATATAAATC CGGTATTTTG CTCGGCTTAG GGTTATACGC CATTGGCGCT AGTCTCTTTA TACCCGCATC GATATACATG GAGTTTTCTT ACTTTTTAGC GGCATTGTGG ATCTTAACAT GCGGTTTGGC GTTACTAGAA ACAACGGCCA ATCCTTACGT GTTGTCTATG GGACATCCCG ATACATCGAC TCAGCGTTTG AACTTGGCTC AAGCGTTTAA TCCTATCGGC TCATTAACAG GTATGTTCGT CGCCAGTAGC TATATTCTTA GTGAGCTACG GGTTGAAGCT TTTAGAGAGC AAGAAAAAGC CGCTCACCCA GAGTATGCGC AAATGTTGCC ATCAGAGGTC GACGGCAAGT TAACCAATGC ATTATATGAC TTTGCGCAAA ACAATCCGGT AGAGCATCAG GCGATGCAAG CGGCTGATCT CATTACTGTT CGTGGGCCGT ATGTGGCTAT TGCAGTTGTG GTTGCGATTG TGTTCTTTGT ATTTCTACTA AGTAAATTGC CTAAAACCAT GGCGCATGCG ACGCCCTTAA CCACGTCTGA ATTAAAGAAC ACATTTCAGC GCTTATTTGC CAACAAATGT TATTTAGAGG GCGTGATCGC GCAAGCTTTC TATGTTGGGG CACAAATCAT GTGCTGGACG TTCGTTATTC ATTACGGCAT GACATCAGTA GGGCTAAGTG CCTCTGAAGC ACAAAGCTAT AACATGGTGG CCATGGGAAT ATTTTTGGCT AGCCGCTTTA TATGTACATT TTTACTCGGT TTCTTTAGGC CCGGGCAGCT GTTGATGTTG CTTGCTTTAG GTGGGTTTGT TTTGTCCCTA GGGACTATCT TCGTCGGAGG GTACACAGGG TTGTACTGCT TAATTGCTAC CTCAGCGTGC ATGTCGTTAA TGTTCCCAAC CATTTACGGT ATTGCGCTCA AAGGAATGGG CGAAGATGCT AGCCTAGCGT CGGCTGGTTT AGTGATGGCA ATAGTCGGTG GGGCGCTTAT GCCTCCCATC CAAGGCTCTA TGATTGATGG CGCTGCGCTT ATCGACGGCA TCCCGTCAGT GCAAACGTCA TTCGTGCTGC CGCTCATTTG CTTTGCAATG ATATGCCTGT ACGGATATCG CGCTCACTAT AAGTATGGTC GATAA
|
Protein sequence | MSSGMEQTAE AVSVQKNQGS KPQILEAKYI VPFLLVASLF PLWGFANDVT NPLVKAFKDI FMISNAQSSL VQFAFYLGYG VMAIPAAIFI RRFSYKSGIL LGLGLYAIGA SLFIPASIYM EFSYFLAALW ILTCGLALLE TTANPYVLSM GHPDTSTQRL NLAQAFNPIG SLTGMFVASS YILSELRVEA FREQEKAAHP EYAQMLPSEV DGKLTNALYD FAQNNPVEHQ AMQAADLITV RGPYVAIAVV VAIVFFVFLL SKLPKTMAHA TPLTTSELKN TFQRLFANKC YLEGVIAQAF YVGAQIMCWT FVIHYGMTSV GLSASEAQSY NMVAMGIFLA SRFICTFLLG FFRPGQLLML LALGGFVLSL GTIFVGGYTG LYCLIATSAC MSLMFPTIYG IALKGMGEDA SLASAGLVMA IVGGALMPPI QGSMIDGAAL IDGIPSVQTS FVLPLICFAM ICLYGYRAHY KYGR
|
| |