Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0745 |
Symbol | |
ID | 4173096 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 849274 |
End bp | 850827 |
Gene Length | 1554 bp |
Protein Length | 517 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638053747 |
Product | EmrB/QacA family drug resistance transporter |
Protein accession | YP_660327 |
Protein GI | 109897072 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGATG AAAAAGTAAC CGAGATGCCA TCGCTGCGTC AGAAGATTGG CTTTGTTGCT GTGATGCTCG GTATGTTTAT GGCGATTTTA GATATTCAGA TTGTCGCCAG CTCTTTGAAT GAAATTCAAG CAGGGGTGTC TGCCACACCT GATGAAATTT CTTGGGTGCA AACGGCCTAT CTCATCGCCG AAATAATTAT GATCCCGCTG TCAGGCATGT TAACCCGTTG GTTATCAACG CATCTTACCT TCGTGATTTC CTGTGTGGCA TTTACTATCG CCAGTGTCGG CTGCGCCCTT GCGCAAACTA TTGACCAATT AATTATTATG CGCGCCATTC AAGGCTTTGT GGGCGGGGCG ATGATCCCCA TAGCCTATGC CATTAGCTTC AAGTTATTCC CGCTTAGGGT CATGGGAGCA GTGCAAGCGG TGATCGGCAT GATAGCGACA ACCGCTCCTT CAATTGGCCC TACTTTAGGC GGTTACATCA CTCAGCACGC AAGCTGGCAT TGGTTATTTT TAATGAATGT GGCGCCGGGA ATATTGGCCA GCGCGGGTGT GTGGTTTTAC TTACGTATCG ATAAACCAGA TTTTTTATTG TTCAAAAAAA TCGATTTTTT AGGCCTTCTT TATTTGGCGT TATTCTTAGG CCCGCTTGAA TACATACTCG AAGAAGGCCC TGGGGATGAG TGGTTCGATA GCACGCTGAT CTTAATGCTC AGTGCGGTAT GCGCAATGGG CGCGGTAGGT TTTTTCTGGC GGGCCTTTCG CGTAACGCTA CCCATCGTTG ACTTGCGCGT GTTTGGCGAC CGTAACTTCG CATTAGGTGC TTCATTAGGC TTTATTATCG GAATTGCTCT GTACGGCATG GTGTATCTAA TGCCGTTGTT TTTAGGCACG GTGCGGGGGT TTAATAGTTT TCAAATTGGC CAGCTGATGT TTGTGACAGG GGCATCAATG TTCTTTAGTG CCCCCATTAT TGGTCGGCTA TCTGACAAAG TTGATGCGCG TTATATGTTA GCGGTTGGCT TAGTAATGGT GGGCACGGGC TCTGTGATGA ATGCGAACCT TACGGATCAA GCAGATTTTA ACCAGTTTAT GTGGCCGCAA ATGGTGCGCG GGGTGGGCTT ATTGATGTGT TTATTAACGG CCTCTCGTAT TGCCATGGGC ACCTTGCCAA ACAGTGAGAT CAGTAACGCA GCGGGTCTAT TCAACGTGTT GCGTAATTTA GGCGGTGCAG TGGGCCTAGC CTTTATGGAT ACTATACGTG ATATTCGCGT GGACTATCAT TGGGCGCAGC TTATTCCTGC TATCGACACC AACCGCGCTG TGGTGCTCGA AGAGCTTACT AAAGCTCAGT TAGCTGTCGC TGGCGCATCG AGCGATCCTG CTGTTGCAGC GATTAAGCAA ATTGCGGATA GAGTCATGGT GCAAGCGCAA GTACTGGCCT TTAATGATCT ATTTCTATGG ATTGGCGCTA TGTATGCCTG TGCCTTGCCG TTGATGTTTT TTATTCGTAA GGCCAAGAAC GAAGATACTG GCTCAGCGCA TTGA
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Protein sequence | MSDEKVTEMP SLRQKIGFVA VMLGMFMAIL DIQIVASSLN EIQAGVSATP DEISWVQTAY LIAEIIMIPL SGMLTRWLST HLTFVISCVA FTIASVGCAL AQTIDQLIIM RAIQGFVGGA MIPIAYAISF KLFPLRVMGA VQAVIGMIAT TAPSIGPTLG GYITQHASWH WLFLMNVAPG ILASAGVWFY LRIDKPDFLL FKKIDFLGLL YLALFLGPLE YILEEGPGDE WFDSTLILML SAVCAMGAVG FFWRAFRVTL PIVDLRVFGD RNFALGASLG FIIGIALYGM VYLMPLFLGT VRGFNSFQIG QLMFVTGASM FFSAPIIGRL SDKVDARYML AVGLVMVGTG SVMNANLTDQ ADFNQFMWPQ MVRGVGLLMC LLTASRIAMG TLPNSEISNA AGLFNVLRNL GGAVGLAFMD TIRDIRVDYH WAQLIPAIDT NRAVVLEELT KAQLAVAGAS SDPAVAAIKQ IADRVMVQAQ VLAFNDLFLW IGAMYACALP LMFFIRKAKN EDTGSAH
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