| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0723 |
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| Symbol | |
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| ID | 4172179 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 816009 |
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| End bp | 818609 |
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| Gene Length | 2601 bp |
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| Protein Length | 866 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638053725 |
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| Product | 1A family penicillin-binding protein |
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| Protein accession | YP_660305 |
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| Protein GI | 109897050 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCCAG ACCTACCCAG TGTGGATATG CTCAAAGATG TGCGCTTGCA AACGCCGATG
CGCGTTTACA CCCAAGATGG GAAGTTGATT TCACAGTTCG GGGTGAAACG CCGTATTCCG
CTTACCATTG AAGACGTGCC ACAGGATTTA ATTAATGCTG TTTTGGCCAC AGAGGACAGC
CGTTTTTATC AACATCCAGG GGTTGACCCT ATCGGTATGG CGCGAGCTGT GGTCAACCTT
ATTTTGACTG GAGAGAAGGG ACAGGGCGGT AGTACGTTAA CCATGCAGTT GGCGCGAGGT
TTCTTTTTAA CGAGAGATAA AACATATATA CGCAAAATTA AAGAAATCTT TATCGCTTGG
CACATGGAGC AATTGCTCAC CAAACAAGAA ATTTTAGAAC TGTATCTAAA CAAAGTTGAA
CTAGGTCATC GTGCTTTTGG TTTTGGTGCA GCCGCCCAAG TTTACTACGG CAAAACGGTA
AACCAGCTAA CGCTTGCACA AATGGCAACC ATCGCTGGGT TACCGCAAGC ACCATCAGTC
CTTAACCCTA TCAGTCGTCC AGATCGCTCC AAAATTCGCC GTCGTGTGGT TCTGCTGCGT
ATGTTGGATG AGAAATACAT TACTCAGGCT CAGTTCGATG AAGCGGTAAA TGCACCGATT
ACGGCAAAAA AACATGGTGC CGAAATCGAA TTCTCAGCAC CTTATTTGGC GGATTTAATT
TGGAATGAAA TGGTCGAGCT GTATGGCAAA GAAGAAGCGG AAACTGGCGG TTATCAGGTT
TACGCCACCG TACCTTCTGC CACTCAGTTA GCGGCGCAAA AAGCGGTTCA GCGAAACTTA
CATGACTATG ATGAGCGCCA TGGTTATCGC GGAGTTGAAC AACAACTTTG GGTTCCCGCT
GAGTTACCCG TCAAGCCTGA GGACACTGCT GGGTCACAGA CCGCCCCCGC TATTTCTAGT
GAACCATGGG ATGAAGAGAA AATGCTGAGC TTCCTTGAGG AGTATCAAAC ATTTGAGTCT
ATGCAGCCAG CAATCGTAGC CAAAGTGAAT GACAAAGACA TAACCATTTT CACTCGCTCA
GGTCGCTACA GTGTTATTGA TTGGGATGGA CTAGATTGGG CGCGTAAATA CATAACAGAT
ACTAGGCAGG GCAATGAGCC TGAGAAAGCC AGTGATATAG TCTCGGAAGG TTCGCTGATT
CTTATTCGCC AGCGAGAAGA CGATAAACAT TGGCAACTTA CCCAGTATCC AGATGCCAGT
AGCGCCTTTA TTGCATTAAA CCCTCACAAC GGCGCTGCGC AGGCGGTGAT CGGCGGCTAC
AGTTTTTACC AAAGTCAGTT TAATCGAGCG ACACAAGCTA AGCGGCAAGT GGGCTCGAAC
ATCAAACCTT TCATTTATTC TTCGGCGTTA GCCAATGGCT TTACCTTAGC TAGCATTATT
AATGATGCCC CGATTAACCA ATGGGAGCGC GGAACGGGCA ATGCTTGGCG TCCTGAAAAC
TCGCCACCAG AATATGATGG GCCAATTCGA TTGCGGGTTG CCTTAGGAAA ATCAAAGAAC
GTGGTGTCAG TGCGCTTAGT GCGTGCTGTG GGGCTTGAAA AAGTACGCCA GCACTTGTCG
CGGTTTGGTT TCGATTTATC AGAAATACCC AAAGATGAAA CTGTGTCTTT AGGTTCGGGT
TCACATACGC CATTGGAAGT GGCGACAGCA CTGTCCGTGA TTGCCAATGG TGGCTTTTTA
ATTCAGCCGC ATTTTGTTGA GCGCATTGAA GATGATTACG GAAAAGTGCT TTGGAAATCC
AATCCAGTGC AAGCTTGTGA CCCCTGTGGT GATGCTGATG AAGATGCAGC CGAACCTGAG
CCTGAACAGA TGATGGACAT TGAAGCCATG CTTGCAGCTG AATTAGGCTC AGGGCAATTT
GGGCAAAGCG AGGCGATGCC AGCACAAAGT AGTGACTCCG CCGATGCACC TGCACCGATC
CGCTCGGCCC CAAGGGTGCT GGACGAAGAC AACGCATTCT TAGTGGCAGA AATGATGCGC
ACAGCCGTAA AAACCAATGG TAATTGGAAT AAGAAGACCT ATTGGCAAGG TACGGGCTGG
CGGGCAAGTA ATTTGCTTCA AAGAGCGGAT ATAGCAGGAA AAACCGGTAC CACTAATGAT
TCAAAAGATA CTTGGTTTAG TGGCTTTACC AACGATTTAG TAGCGACAGT TTGGGTGGGC
TTTGATGATA TGAGTCGCAG TTTAGGACGC GCCTCACGCA ACCAAAACTT GGTTAACAAG
AACCCACAGA AATTTAATTT CATTGGCAAC GCCATGATAG GTGGCGAAGA TGGCGCTAAA
GCGGCTGAGC CCGCTTGGAT CCGCTTTATG CAACAAGCGT TAGACGGGGT GCCTGAAAAG
AAACGTCCTA TGCCGACGGA TTTGGTGACT ACACGAATTG ACCTTGCTAG TGGTAAATTA
ACTCAGCGCA CTGATCATAC GTCAATGTTT GAGTATTTTA TGCAAGGTAC GGCTCCTACA
AGCTATGTGA GCGACAGCGA ATTTGTCGAC CCAGCTGAAG AAAGCAGTGA ACAAAGCAAA
CCACTTGAAG ACATTTTTTA A
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| Protein sequence | MKPDLPSVDM LKDVRLQTPM RVYTQDGKLI SQFGVKRRIP LTIEDVPQDL INAVLATEDS
RFYQHPGVDP IGMARAVVNL ILTGEKGQGG STLTMQLARG FFLTRDKTYI RKIKEIFIAW
HMEQLLTKQE ILELYLNKVE LGHRAFGFGA AAQVYYGKTV NQLTLAQMAT IAGLPQAPSV
LNPISRPDRS KIRRRVVLLR MLDEKYITQA QFDEAVNAPI TAKKHGAEIE FSAPYLADLI
WNEMVELYGK EEAETGGYQV YATVPSATQL AAQKAVQRNL HDYDERHGYR GVEQQLWVPA
ELPVKPEDTA GSQTAPAISS EPWDEEKMLS FLEEYQTFES MQPAIVAKVN DKDITIFTRS
GRYSVIDWDG LDWARKYITD TRQGNEPEKA SDIVSEGSLI LIRQREDDKH WQLTQYPDAS
SAFIALNPHN GAAQAVIGGY SFYQSQFNRA TQAKRQVGSN IKPFIYSSAL ANGFTLASII
NDAPINQWER GTGNAWRPEN SPPEYDGPIR LRVALGKSKN VVSVRLVRAV GLEKVRQHLS
RFGFDLSEIP KDETVSLGSG SHTPLEVATA LSVIANGGFL IQPHFVERIE DDYGKVLWKS
NPVQACDPCG DADEDAAEPE PEQMMDIEAM LAAELGSGQF GQSEAMPAQS SDSADAPAPI
RSAPRVLDED NAFLVAEMMR TAVKTNGNWN KKTYWQGTGW RASNLLQRAD IAGKTGTTND
SKDTWFSGFT NDLVATVWVG FDDMSRSLGR ASRNQNLVNK NPQKFNFIGN AMIGGEDGAK
AAEPAWIRFM QQALDGVPEK KRPMPTDLVT TRIDLASGKL TQRTDHTSMF EYFMQGTAPT
SYVSDSEFVD PAEESSEQSK PLEDIF
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