Gene Patl_0596 details

Gene Information

• Locus tag: Patl_0596
• Symbol: rplJ
• ID: 4173253
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 681094
• End bp: 681612
• Gene Length: 519 bp
• Protein Length: 172 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 638053599
• Product: 50S ribosomal protein L10
• Protein accession: YP_660179
• Protein GI: 109896924
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0244] Ribosomal protein L10

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0140503
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGCACTAG GCTTAGCAGC AAAGAAAGAG ATCGTCGCAG AAGTTAGCGA AGTTGCATCT 
CAAGCTCTAT CCGTTGCCGT TGCTGAATAC CGTGGTATGG AAGTATCAGA ACTAACTGAA 
CTTCGCGTTA AAGCTCGTGA GCAAGGCGTA TATCTAAAAG TTGTTAGAAA TACTCTAGCT 
AAGCGCGCAT TATCCGAAAC TAAGTTCTCT GATTTGGAAA GTGCCTTAAC TGGTCCGTTA 
ATTTACGGAT TTTCGATTGA AGCACCAGGC GGTGCGGCGC GTCTTTTTAA AGACTTCGCT 
AAAACGAATG CCAAGTTAAA CGTAACTGCC CTTTCTATTG GTAGTGGTCT ATTGGGTCCT 
GAGAAATTGG ACGCAGTGGC AGCATTGCCT ACCCGCGACG AAGCGCTTGC GAGATTGCTT 
GCAACCTTCA AAGCACCTGT TGGGAAATTC GTTCAAACTG TTAACGAAAT TCCTTCCAAG 
TTTGTGCGCG TATTGGCAGC GATCAAAGAA ACCAAATAA 

 

Protein sequence

MALGLAAKKE IVAEVSEVAS QALSVAVAEY RGMEVSELTE LRVKAREQGV YLKVVRNTLA 
KRALSETKFS DLESALTGPL IYGFSIEAPG GAARLFKDFA KTNAKLNVTA LSIGSGLLGP 
EKLDAVAALP TRDEALARLL ATFKAPVGKF VQTVNEIPSK FVRVLAAIKE TK