| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0588 |
|---|
| Symbol | |
|---|
| ID | 4173244 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 672941 |
|---|
| End bp | 674320 |
|---|
| Gene Length | 1380 bp |
|---|
| Protein Length | 459 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638053590 |
|---|
| Product | ATP-dependent RNA helicase DbpA |
|---|
| Protein accession | YP_660171 |
|---|
| Protein GI | 109896916 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGTAAGG AATTTTCCTC CCTGGGGCTA GAAGCAGCCT TGTTAGATAA TTTGCAAAGT
ATGGGGTTCA GTCAAATGAC TGAAATTCAA GCCGGAACGC TACCTGCTAT TTTAGAGGGG
CGTGATGTAG TGGCGAAAGC CAAAACCGGA AGTGGTAAAA CCGCTGCGTT TGGCTTGGCT
CTATTGCATA ATTTAGACGT GAAGCGCTTT CGTGTTCAAG CTCTAGTGAT GTGTCCTACC
CGAGAGTTAG CGGAGCAAGT TGCTCTCGAA ATCCGCCGTT TAGGGCGCGG TATTCACAAT
ATTAAAGTGT TGACGTTGTG TGGTGGTACG CCTATGGGGC CGCAAATTGG CTCACTGGAA
CACGGTGCTC ATATTATCGT TGGCACACCT GGACGTATAA TGGATCATCT TTACAAGCGC
CGTTTGGATT TATCGGAAGT TAATACGCTG GTATTGGATG AAGCAGACCG TATGCTTGAT
ATGGGCTTTG AAGATGAAAT GGATGCCGTT ATTAAAAGTG TGCCCGAGCA GCGTCAAACC
TTGCTGTTTT CTGCGACCTA CCCAGATTCA ATCGCCGCGA TCAGTGGCCA AGTGCAAAAA
AGCCCATTAG AAGTCACTGT TGAATCCACC CACGATACCG ACACCATAGA GCAAGTATTT
TTCGAAGTAG AAGATGCACA TCGTACAAAA GCTGTAGCAG CGCTATTAAG TCATTATCAA
CCTGAATCAG CAATTGTGTT TTGTAATACA AAAATAGCCT GTCAGGAAGT GGCTGATGAG
CTGCAGTCCA TGGGGGTATC AGTACTAGCT CTGCATGGTG ATTTAGAGCA GCGTGAGCGT
AACCAAGTGC TAGTGCGTTT CGCAAACAAG AGTGCCTCTG TGCTGGTGGC AACGGATGTG
GCCTCACGGG GCTTAGACAT TAAAGAAGTA AACGCTGTGA TTAGTTATCA CATTACGCCC
GACCCAGAAG TACATATCCA TCGCATAGGT CGCACGGGCC GAGCGGAATC AAAAGGGGTT
GCACTAACAC TTGTTGCGCC AGATGAAATG GCCAGGGCAA ACGCCATTGA AGATTACCAA
AAAGCGAAAT TGAAATGGAC AGGCATTCAA GCCATGCGTT TTCATGCTAA TCGCTTGATC
CAACCACAAT ACAGTACGTT ATGTGTTGAT GGCGGTAAGA AAGCCAAACT CAGGCCGGGT
GACTTACTTG GCGCTTTGAC CAAAGAAGCG GAAATCCCTG GGGATGATAT TGGTAAGATC
CATATCACTG AGTTCCACGC CTATGTAGCA GTAAAAACGC GCAGTGTTAA GCGAGCCATG
CGCCAATTAG GTGAAGGTAA AATCAAAGGG AAAAAGTTTA AAGTGCGTAA GTTTAACTGA
|
|---|
| Protein sequence | MSKEFSSLGL EAALLDNLQS MGFSQMTEIQ AGTLPAILEG RDVVAKAKTG SGKTAAFGLA
LLHNLDVKRF RVQALVMCPT RELAEQVALE IRRLGRGIHN IKVLTLCGGT PMGPQIGSLE
HGAHIIVGTP GRIMDHLYKR RLDLSEVNTL VLDEADRMLD MGFEDEMDAV IKSVPEQRQT
LLFSATYPDS IAAISGQVQK SPLEVTVEST HDTDTIEQVF FEVEDAHRTK AVAALLSHYQ
PESAIVFCNT KIACQEVADE LQSMGVSVLA LHGDLEQRER NQVLVRFANK SASVLVATDV
ASRGLDIKEV NAVISYHITP DPEVHIHRIG RTGRAESKGV ALTLVAPDEM ARANAIEDYQ
KAKLKWTGIQ AMRFHANRLI QPQYSTLCVD GGKKAKLRPG DLLGALTKEA EIPGDDIGKI
HITEFHAYVA VKTRSVKRAM RQLGEGKIKG KKFKVRKFN
|
|---|
| |