Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0522 |
Symbol | |
ID | 4173506 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 606787 |
End bp | 607446 |
Gene Length | 660 bp |
Protein Length | 219 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638053524 |
Product | two component LuxR family transcriptional regulator |
Protein accession | YP_660105 |
Protein GI | 109896850 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATAACGC TACTGGTTGC AGATGATCAT CCCTTGTATA GGGATGCTTT ACGCGGAGCC TTAACACTGT CGTTCAGCGA TTTAACGTTG CTTGAAGCAG CCGATTTAAT GCAAACAGTA GCCTTATTAG AAGAGCATAA AGACATTGAT TTGTTGCTCT TGGATTTACA CATGCCAGGC AGTGGTGATT TGTTTGGTCT GATACATATT CGTAAGCTAT TCCCTGAATT ACCAGTGGCT GTGGTGTCAG GTTTAGAAGA TCCGATGATT ATCACCAAAG TGATTAATCT AGGCGCCTTA GGTTTTGTGC CTAAGACCAC TGGGGCGGCA CAAATCGCTG ATGCGGTAAC CAGTATGCTA GAAGGTGACA TTTGGTTACC CGAGAGTTAT GCCAGTGATG AAGTGGAATT AGACAATGAA TTTGCTGAGC TGGCTGATAA TGTGGCCAGT TTAACACCTG CGCAATATAA GGTGTTGTGC TATATGCGAG ATGGCTTATT AAACAAGCAA ATCGCTTACA ACCTAGATAT AGCAACCGCC ACGGTGAAAG CACACGTGAC GGCTATCTTC AAGAAATTAC ACATCAATAA TCGAACTCAA GCCGTGCTTA TTGCCTCACA ACTTCAGCTT GAGCCGCCTG CAGCAGCGCC CTCAACTTAG
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Protein sequence | MITLLVADDH PLYRDALRGA LTLSFSDLTL LEAADLMQTV ALLEEHKDID LLLLDLHMPG SGDLFGLIHI RKLFPELPVA VVSGLEDPMI ITKVINLGAL GFVPKTTGAA QIADAVTSML EGDIWLPESY ASDEVELDNE FAELADNVAS LTPAQYKVLC YMRDGLLNKQ IAYNLDIATA TVKAHVTAIF KKLHINNRTQ AVLIASQLQL EPPAAAPST
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