Gene Patl_0469 details

Gene Information

• Locus tag: Patl_0469
• Symbol: rplC
• ID: 4171812
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 547965
• End bp: 548603
• Gene Length: 639 bp
• Protein Length: 212 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 638053472
• Product: 50S ribosomal protein L3
• Protein accession: YP_660053
• Protein GI: 109896798
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.000000509154
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGATTG GTCTTATCGG TCGTAAAGTT GGTATGACAC GCATCTTCAC TGAAGACGGC 
GTATCAATAC CAGTGACTGT TATAGAAGCC ACCCCGAACC GTGTTACTCA GTTACGTACT 
GACGAAACCG ACGGGTATAC AGCGCTTCAA GTAACCGCTG GCGACAAAAA AGCGAACCGC 
GTAAATAAAG CAGCAGCAGG TCATTTTGCT AAAGCTGGCG TGGAAGCTGG TCGTGGTTTA 
TGGGAATTCC GTTTAGACGG CAACGAAGGC GAAGGCATAG AAGTTGGCAG TGAAATCACT 
GTTGAAATCT TTGCTGAAAC CAAAATGGTT GACGTTGCAG GAACTTCTAA AGGTAAAGGT 
TTCCAAGGTG CTATTAAGCG CTGGAACTTT AGCCACCAAC GTAATTCACA TGGTAACTCA 
TTGTCTCACC GTGCTCCTGG TTCAATTGGC CAAAACCAAT CACCAGGTAA AGTCTTCAAA 
GGCAAAAAAA TGGCCGGTCA GATGGGAAAT AAACGTGTGA CAGTTCAGTC TTTGGATGTA 
GTACGTGTTG ACGCAGAGAA CAACCTTCTT CTAGTAAGAG GCAATGTTCC TGGAGCGCCA 
GGTGGCGACG TCATCATCAA AGCTGCAGTT AAAGCGTAA 

 

Protein sequence

MAIGLIGRKV GMTRIFTEDG VSIPVTVIEA TPNRVTQLRT DETDGYTALQ VTAGDKKANR 
VNKAAAGHFA KAGVEAGRGL WEFRLDGNEG EGIEVGSEIT VEIFAETKMV DVAGTSKGKG 
FQGAIKRWNF SHQRNSHGNS LSHRAPGSIG QNQSPGKVFK GKKMAGQMGN KRVTVQSLDV 
VRVDAENNLL LVRGNVPGAP GGDVIIKAAV KA