| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0430 |
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| Symbol | |
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| ID | 4173721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 508359 |
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| End bp | 509669 |
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| Gene Length | 1311 bp |
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| Protein Length | 436 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053433 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_660014 |
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| Protein GI | 109896759 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000114483 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAA CACTTCTTTC GCTATTGATT GGCTTTGGCG TATCGAATAA CGCATTTGCT
GACGACTTAC TAAGCGTATA TCAGCAAGCA TTACAAAACG ATCCAGCCAC CTTGCAATCA
AAAGCAAACA GAGAAGCGGC TTTTTCTGAT ATCGAAATCA GCCGCGCAGG CTTGTTACCC
CAAGTATCAT TGAGCTTGCA GGCAGCAGAA ACCTATGGCG ATTTAGACCG TTCAACTAAT
GACGTTACAG TGAATTTATC ACAAACTATC TATGATCGTT CGCTTTGGGT TGGTTTAGAT
CGCGCAGAGC TTGTTGCGAG TCAATCAGAT GCTAGCCTTG CGCTAACGAT GCAAAACCTT
ATTTTACGCA CGGTTAGTGC TTATTTTGAT ACTCTTCAAG CCCAAGATGA TTTAGCGTTT
GCTCGCGCCG AAAAACGCGC CATTGCTCGC CAACTTGAAC AAACTAAGCA ACGCTTTGAA
GTGGGTTTGA CTGCCATTAC TGATGTGCAC GAAGCACAAG CACAGTACGA TACTTCAGTT
GCAGCCGAAA TCAGTGCCGA AAACGCAGTT GAAACCAATC TTGAAGCTTT ACGCGAAATT
ACAGGCGTCT ATTATCCAGA CTTGAATGTG CTCAATACTG AGCAGTTCTC TGCCAGCTTG
CCAACCCCAG CGAACGTCAA CGATTGGCTA AAAACTGCTG AGCAGCGAAA TTTGGAATTA
CTGGTATCCA ATGCCAGTGT GGATATCGCT AAGTTTGATA TTAAGAGTGC TCGTGCTGGG
CACTACCCAA CTGTCGGCAT AAGCGGTAGT GCCAATAGTA ATGACACCGA TGGTTTCGCT
ATTAACCCTG GTGCAGGTGG TAGTGACCGT TTTAATACCT ATGGTGTGAC GTTATCTGTC
GACGTGCCTT TGTATACTGG TGGCCGAGTA TCTGCCAATG TCGACTCTGC AAAACACAGA
TTTGTTGCCA CCAGCGAAGA CCGCGAACGT ATTCACCGCT CAGTTATCCG CAACGTGCGC
TCAAACTACA ATGACATAAA AGCCGCCATT TCACGTATTA AGGCGTTTGA GCAGGCAGTC
GTATCTGCCC AGAGTGCATT AAAAGCCACA GAAGCCGGCT TTGATGTGGG TACCCGTACT
ATTGTTGATG TACTGGACAG CACACGTAAC TTGTTTGATG CCCGTCGTAA CCTATCAAGT
GCTCGATACG GTTATGTTGT TAGCACGCTC AACCTGAAAT TAGCCGCTGG TACGTTATCC
ATCGAAGACG TAACAGACAT TAACCAAGGT TTATCTGCGC AAATTAAATA A
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| Protein sequence | MKKTLLSLLI GFGVSNNAFA DDLLSVYQQA LQNDPATLQS KANREAAFSD IEISRAGLLP
QVSLSLQAAE TYGDLDRSTN DVTVNLSQTI YDRSLWVGLD RAELVASQSD ASLALTMQNL
ILRTVSAYFD TLQAQDDLAF ARAEKRAIAR QLEQTKQRFE VGLTAITDVH EAQAQYDTSV
AAEISAENAV ETNLEALREI TGVYYPDLNV LNTEQFSASL PTPANVNDWL KTAEQRNLEL
LVSNASVDIA KFDIKSARAG HYPTVGISGS ANSNDTDGFA INPGAGGSDR FNTYGVTLSV
DVPLYTGGRV SANVDSAKHR FVATSEDRER IHRSVIRNVR SNYNDIKAAI SRIKAFEQAV
VSAQSALKAT EAGFDVGTRT IVDVLDSTRN LFDARRNLSS ARYGYVVSTL NLKLAAGTLS
IEDVTDINQG LSAQIK
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