Gene Patl_0379 details

Gene Information

• Locus tag: Patl_0379
• ID: 4173469
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 433657
• End bp: 435582
• Gene Length: 1926 bp
• Protein Length: 641 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 638053377
• Product: twin-arginine translocation pathway signal
• Protein accession: YP_659963
• Protein GI: 109896708
• COG category: [C] Energy production and conversion
• COG ID: [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTGATG AAAAAGATAT CAAATACCAG AAAAGCAGCA GTAAAAGTGT CAATCAAAAT 
GAAAGTGCAT CAGAAAAAAT TAAAGAAGGC GTCACCCGGC GTGATGTTTT AAGAGCAGGG 
GCATATACGG CAGCGGCCTT AGCTGCGCCT TTTATTGTCA ACACCGGCGC GAGGGTGGAA 
GCCTCTACCA CAGAGCCGGT ACGCAAAGCC GACTTGATTG TGATAGGGAG CGGTTTTGCT 
GGCACCTTTG CCGCGCTAGA AGCTCGCAAA CAAGGACTAA GTGTTGTGAT GGTGGATAAA 
GGCGTGGTGG GCTGGTCAGG CATGTCACCA TGGGCATCCG ATAGCCGCCC CTTCGACCCA 
GACATTTATG ACAGAGACGA ATGGCAACAA AACATGGCCA TGAACACCGA ATATGTTAAC 
GACCGAAAAT GGTTAGACAT CTTTATGGAC GAGTCACTAG ATATCTTTAA TATCTTGCAT 
GAAATGGGAG CCCACAATAC GCGACCATTT GAGCGTGGCT CAGTGGTGTT TCGTAAAGAA 
TTAGAAGACG CAGGAGTATC ACTTGTCGAA CGCACCATGA TAACGAGTTT GCTGCAAGAA 
GATGGGGGCA AAGTGTGTGG TGCCGTGGGT TTCACTTACG ACGATACTGC TGAGCCGTCA 
AAAGCGGTGG TGCTCAGAGC TGACGCAGTA TTGCTTTGCA CAGGTGCAGG TTCCTATAAA 
AGCCCAGGGT TTCCAATTTG GGGGCAAACC TTTGATGGCG ATGCGCTCGC GTTTAATGCT 
GGGGCCAAAA TTGTTGGTAA AGAATACAAT GACACACACC CTACGTTCGC CTTTGCCCCT 
GCCGCTGCCT ATGAGGGCTG GCGCTGGGCA CAAAGTGTTA AAGGGGCGTA CGTAATGGTA 
GGCCCGCCAG ATAAGCTAGA CGGGGGCTTA ACCCTTGGCA GTGCGTTAGG TGTTTATCAA 
AATGGGGTAA ACCGCCAATT AGGCGTGGGC CCTGGTGGGG AGCCACCCCC ACCAAAAGAC 
GGCCCAAGGC CTGAATCGCT CATAGTAAAA GACAACCGTA AATATTTAGG AAAGGGTTAC 
TTAACACAGC CAGATTTAAT ATTGGACTTA GGTGGGCCGC CTGAAGGTGC GGGTGAAGAC 
GCCGGCTTTG GCCACCGAGT GGGTGGGGCG ACTGCAGGTA TGGGCGTGCA TAAAAGTGAA 
GGTGTTTTCT GTTCCGATTA CAGCGGAGCA GCTGATAGTG TTGAAGGTTT GTATGCTGCT 
GGTGATGCAT TGGGCTCGAT GCTGTGTGGT TCACTATACC CAGGGCGAGG ATTTTCCTCT 
TACGGTTCTG CTATTCAGGG GCGAATAGCC GCTCGAAATG CAGTGAAATA CGTAAAATCT 
TTAGCGAGGC GTCCGAAAAT CAGCCAACAA CAAATTCAAG CCAAGTTAGC CGAAATGTGG 
GCTCCGCGTA ATGTCGAACA AGGTTACAGC CCTGAATGGA TAACCGCGAC ACTGCAAAAC 
ACCATGACCC CGATACATAT TTTGTATATC AAAGAACCGC GCAGATTAGA TGGCGCGCTG 
GCTTCAATCG AATTCTTACG TACCCAATGT ATACCCAAGA TGATTGCCAG AGATGGCCAC 
GAGCTGCGTA TGGCCCATGA GGTTAAAAGC ATGTTGTTGA ATGCGGAAAT GAAATTGCGT 
ACTGGCTTAT ATAGAGAGGA AAGCCGTGGC ACGCATTTTC GAGAAGATTT TCCAGCTAGG 
AATGATAACG ACTGGCATTG CTGGGTGACG GTACAAAAAC AAAAAGACGG AATGTTGATG 
GGCAAGCACA TGTTGCCTGA ATCGTGGAAG CCGGACCAGA GCAAAAGTTA CCGGGAAAAC 
TATCCTCGGG AGTTCCCAGG AGAAATGGAT TTCCTCGCTA ATAATCCACA GTTTACCCGC 
CGATGA 

 

Protein sequence

MTDEKDIKYQ KSSSKSVNQN ESASEKIKEG VTRRDVLRAG AYTAAALAAP FIVNTGARVE 
ASTTEPVRKA DLIVIGSGFA GTFAALEARK QGLSVVMVDK GVVGWSGMSP WASDSRPFDP 
DIYDRDEWQQ NMAMNTEYVN DRKWLDIFMD ESLDIFNILH EMGAHNTRPF ERGSVVFRKE 
LEDAGVSLVE RTMITSLLQE DGGKVCGAVG FTYDDTAEPS KAVVLRADAV LLCTGAGSYK 
SPGFPIWGQT FDGDALAFNA GAKIVGKEYN DTHPTFAFAP AAAYEGWRWA QSVKGAYVMV 
GPPDKLDGGL TLGSALGVYQ NGVNRQLGVG PGGEPPPPKD GPRPESLIVK DNRKYLGKGY 
LTQPDLILDL GGPPEGAGED AGFGHRVGGA TAGMGVHKSE GVFCSDYSGA ADSVEGLYAA 
GDALGSMLCG SLYPGRGFSS YGSAIQGRIA ARNAVKYVKS LARRPKISQQ QIQAKLAEMW 
APRNVEQGYS PEWITATLQN TMTPIHILYI KEPRRLDGAL ASIEFLRTQC IPKMIARDGH 
ELRMAHEVKS MLLNAEMKLR TGLYREESRG THFREDFPAR NDNDWHCWVT VQKQKDGMLM 
GKHMLPESWK PDQSKSYREN YPREFPGEMD FLANNPQFTR R