| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0361 |
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| Symbol | |
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| ID | 4173954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 418168 |
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| End bp | 418761 |
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| Gene Length | 594 bp |
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| Protein Length | 197 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 638053360 |
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| Product | autoinducer synthesis protein |
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| Protein accession | YP_659946 |
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| Protein GI | 109896691 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG3916] N-acyl-L-homoserine lactone synthetase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.2275 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGACAAA TAAAAGTAAT AGATAAAAAC AATAATGAAT TTGGACGTAA TCCAGAGTTA
ATTAATGATA TGTTCAAATT AAGATCTGAA GTCTTTAAAG GGCGATTAGG TTGGGATGTC
GAATCTGATA AAGGCTTGGA AAAAGACTTT TTTGATAACC AGCAGCCAAG TTATATTGCT
ATGTTGAATG AGAGCGATGA TATTGTTGGT GGATGGCGTG CAATACCAAC AACAAAAAGT
TATATGCTAA AAGATATATT CCCAGAGTTA TTGAGAGGGG AGTTAGCACC TGAGGAAAAA
AATATTTGGG AAATAAGTCG CTTTGCTATT AGTAAAAATA GAACAGGGAA ATCTGCTCGA
GTCGCAAGCG AAGATACAGC TGCTTTAGTA AGTTCATTTT ATTCATTTGC GATTAAAAAT
GGCATTACAG ATTATGTACT GGTAACCACC ACGGCCTGTG AGCGAATTCT TCGGTATTTG
GGCGTAAATA TGCGCAGAAT GGGAGATGGT CAGGCGATGC AAATTGGGGT AGAGAAATCT
GTCGCCCTAT GGGTTAAAGT GGACAACAAT TTAAATATTA ATCCTATTCA TTAA
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| Protein sequence | MRQIKVIDKN NNEFGRNPEL INDMFKLRSE VFKGRLGWDV ESDKGLEKDF FDNQQPSYIA
MLNESDDIVG GWRAIPTTKS YMLKDIFPEL LRGELAPEEK NIWEISRFAI SKNRTGKSAR
VASEDTAALV SSFYSFAIKN GITDYVLVTT TACERILRYL GVNMRRMGDG QAMQIGVEKS
VALWVKVDNN LNINPIH
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