Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0349 |
Symbol | |
ID | 4173172 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 405241 |
End bp | 407370 |
Gene Length | 2130 bp |
Protein Length | 709 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638053348 |
Product | metal dependent phosphohydrolase |
Protein accession | YP_659934 |
Protein GI | 109896679 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTATCTTT TTGAGGGTTT AAAACAAAAG CTTGAGGCCT ACCTCCCACC GGACAAGGTA GCGGAAACTC AACGTGCGTT TGTGGTAGCC CAAGAAGCCC ATGATGGGCA GATGCGTTCC AGTGGCGACC CATACATTAC TCACCCCGTA GCCGTGGCTG GCATTTTGGC GGACATGCGT CTTGACCATG AAACGCTAAT GGCTGCATTG CTGCACGATG TCATCGAAGA CACCCATCAC AACAAAGAAT CCCTGAGCGA ACAGTTTGGT GAGACGGTTG GTGAGTTAGT CGAGGGCGTT AGTAAGCTCG AAAAGATTCA TTTTAGTAGT AAGCAAGAAG CACAAATCGA GAACTTTCGT AAGATGCTCA TGGCTATGGT GCAAGATATT CGCGTTATCT TGATCAAGCT AGCAGACCGC ACACACAACA TGCGCACCCT CGGTTCATTA CGTCCTGACA AACGTCGTCG TATTGCCCGT GAAACACTCG AAATTTACTC GCCTATTGCC CACCGTTTGG GTATCCACGA TATCAAAAAT GAGCTTGAAG ATTTAGGGTT TCAGGCTATG TATCCCATGC GCCACCGCGC ATTGAAAGCA GCGGTTAAAC AGGCGAGGGG TAATCGTAAA GAAATTATCG AAAATATTCA TAAAGAAGTG GAAACCCGCT TAGCGGCATT CGGCATGAAC GCGTTGACCA TTGGCCGTGA AAAACACCTG TACTCAATTT ATCGCAAGAT GAAAAACAAA GAGTTGATGT TCAACGAAGT CATGGATATC TATGCATTTC GCGTAGTGGT TGACAGTGCT GATAATTGCT ATCGAGCGCT GGGCGCTATG CATGGCTTGT ATAAACCCAT TGAAGGGCGC TTTAAAGATT ACGTGGCTAT ACCGCGTACC AATGGTTATC AGTCATTGCA TACGTCTTTG ATTGGCCCTC ACGGTATTCC AGTAGAAATT CAGATTCGCA CCGCCGAAAT GGACAAAATG GCCGATATCG GAGTGGCTGC GCATTGGATG TACAAAGACG ATTCGGAGTC CAGCGATACC ACAGCACAAG TGCGCGCCCG TAAATGGATG CAGTCACTTA TTGAGTTACA ACAAAGTGCT AGCTCTTCGT TTGAATTTAT CGAAAACGTA AAAACTGATT TATTCCCAGA TGAGATTTAC GTGTTTACCC CAGATGGGCG CATCATTGAA CTTCCGCTCG GCGCAACCGC GGTTGACTTT GCTTATGCAG TGCACACCGG TGTAGGCAAT ACCTGCGTTG GGGTGAAAGT CGAAAGACGT ACATACTCGT TAAGTAAACC ACTTGAAAAC GGCCAGACCG TCGAAATCAT TACCTCACCA AGAGCGAAGC CCAACGCAAG TTGGCTGAAC TTTGTGGTCA GTGCTAGAGC GCGCTCGCAT ATTCGCCATT ACCTAAAACA TCAGCGCTCC GAAGAAGCAT TCAGCATGGG AAATCGTTTA TTACGCCATG CGCTGGGTAA AACCAAATTA GATGAAATTC CGCAAGCGGA CATCGACCGA GTGGTAGAGG AAACAAAACA CGCTGATTTT AACGCTTTGG TGGCGGATAT CGGCCTAGGC AATGAACTCA GCGCCATCGT CGCTAGGCGT TTACTCGGTG AAGCGGCAGA AATTCCAGAC AGTGGTCGCA ACGTTGCTAT TCGAGGCACT GAAGGGCTAT TGGTATCTTA TTCACGCTGT TGTCACCCCA TCCCAGGGGA TGAAATTGTG GCTGTGCTTA GCCCAGGTCG CGGCATGATG ATTCACCAAG CGGGTTGCAG TAACATTCGT AAACTGAGTA AAGAAGAGCC CCAGCGGGTG CTTGTTATGA AGTGGGATGA TGAACCTCAA GGTGAATTTA AAGCTGCGCT ACGAATCGAA TTAATAAATC ATCAAGGGAC GCTCGCCAAT TTAACCAATA ATGTGGCTTC GTGTGGCTCT AATATCGTCG GTTTACAAAC CGAAGAAAAA GAAAGCGGTA TCTATTACAT TGATATAGAA CTGACCATCA CAGATCGTAT TCAGCTCGCT GATGTCATGC GAAAAATTCG CATCATGCCC GAAGTTCAAA GGGTTTCAAG GCACAGCCAA TCTAAGCAGA ATAAATCACC TAACGTATAA
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Protein sequence | MYLFEGLKQK LEAYLPPDKV AETQRAFVVA QEAHDGQMRS SGDPYITHPV AVAGILADMR LDHETLMAAL LHDVIEDTHH NKESLSEQFG ETVGELVEGV SKLEKIHFSS KQEAQIENFR KMLMAMVQDI RVILIKLADR THNMRTLGSL RPDKRRRIAR ETLEIYSPIA HRLGIHDIKN ELEDLGFQAM YPMRHRALKA AVKQARGNRK EIIENIHKEV ETRLAAFGMN ALTIGREKHL YSIYRKMKNK ELMFNEVMDI YAFRVVVDSA DNCYRALGAM HGLYKPIEGR FKDYVAIPRT NGYQSLHTSL IGPHGIPVEI QIRTAEMDKM ADIGVAAHWM YKDDSESSDT TAQVRARKWM QSLIELQQSA SSSFEFIENV KTDLFPDEIY VFTPDGRIIE LPLGATAVDF AYAVHTGVGN TCVGVKVERR TYSLSKPLEN GQTVEIITSP RAKPNASWLN FVVSARARSH IRHYLKHQRS EEAFSMGNRL LRHALGKTKL DEIPQADIDR VVEETKHADF NALVADIGLG NELSAIVARR LLGEAAEIPD SGRNVAIRGT EGLLVSYSRC CHPIPGDEIV AVLSPGRGMM IHQAGCSNIR KLSKEEPQRV LVMKWDDEPQ GEFKAALRIE LINHQGTLAN LTNNVASCGS NIVGLQTEEK ESGIYYIDIE LTITDRIQLA DVMRKIRIMP EVQRVSRHSQ SKQNKSPNV
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