Gene Patl_0349 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0349 
Symbol 
ID4173172 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp405241 
End bp407370 
Gene Length2130 bp 
Protein Length709 aa 
Translation table11 
GC content47% 
IMG OID638053348 
Productmetal dependent phosphohydrolase 
Protein accessionYP_659934 
Protein GI109896679 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGTATCTTT TTGAGGGTTT AAAACAAAAG CTTGAGGCCT ACCTCCCACC GGACAAGGTA 
GCGGAAACTC AACGTGCGTT TGTGGTAGCC CAAGAAGCCC ATGATGGGCA GATGCGTTCC
AGTGGCGACC CATACATTAC TCACCCCGTA GCCGTGGCTG GCATTTTGGC GGACATGCGT
CTTGACCATG AAACGCTAAT GGCTGCATTG CTGCACGATG TCATCGAAGA CACCCATCAC
AACAAAGAAT CCCTGAGCGA ACAGTTTGGT GAGACGGTTG GTGAGTTAGT CGAGGGCGTT
AGTAAGCTCG AAAAGATTCA TTTTAGTAGT AAGCAAGAAG CACAAATCGA GAACTTTCGT
AAGATGCTCA TGGCTATGGT GCAAGATATT CGCGTTATCT TGATCAAGCT AGCAGACCGC
ACACACAACA TGCGCACCCT CGGTTCATTA CGTCCTGACA AACGTCGTCG TATTGCCCGT
GAAACACTCG AAATTTACTC GCCTATTGCC CACCGTTTGG GTATCCACGA TATCAAAAAT
GAGCTTGAAG ATTTAGGGTT TCAGGCTATG TATCCCATGC GCCACCGCGC ATTGAAAGCA
GCGGTTAAAC AGGCGAGGGG TAATCGTAAA GAAATTATCG AAAATATTCA TAAAGAAGTG
GAAACCCGCT TAGCGGCATT CGGCATGAAC GCGTTGACCA TTGGCCGTGA AAAACACCTG
TACTCAATTT ATCGCAAGAT GAAAAACAAA GAGTTGATGT TCAACGAAGT CATGGATATC
TATGCATTTC GCGTAGTGGT TGACAGTGCT GATAATTGCT ATCGAGCGCT GGGCGCTATG
CATGGCTTGT ATAAACCCAT TGAAGGGCGC TTTAAAGATT ACGTGGCTAT ACCGCGTACC
AATGGTTATC AGTCATTGCA TACGTCTTTG ATTGGCCCTC ACGGTATTCC AGTAGAAATT
CAGATTCGCA CCGCCGAAAT GGACAAAATG GCCGATATCG GAGTGGCTGC GCATTGGATG
TACAAAGACG ATTCGGAGTC CAGCGATACC ACAGCACAAG TGCGCGCCCG TAAATGGATG
CAGTCACTTA TTGAGTTACA ACAAAGTGCT AGCTCTTCGT TTGAATTTAT CGAAAACGTA
AAAACTGATT TATTCCCAGA TGAGATTTAC GTGTTTACCC CAGATGGGCG CATCATTGAA
CTTCCGCTCG GCGCAACCGC GGTTGACTTT GCTTATGCAG TGCACACCGG TGTAGGCAAT
ACCTGCGTTG GGGTGAAAGT CGAAAGACGT ACATACTCGT TAAGTAAACC ACTTGAAAAC
GGCCAGACCG TCGAAATCAT TACCTCACCA AGAGCGAAGC CCAACGCAAG TTGGCTGAAC
TTTGTGGTCA GTGCTAGAGC GCGCTCGCAT ATTCGCCATT ACCTAAAACA TCAGCGCTCC
GAAGAAGCAT TCAGCATGGG AAATCGTTTA TTACGCCATG CGCTGGGTAA AACCAAATTA
GATGAAATTC CGCAAGCGGA CATCGACCGA GTGGTAGAGG AAACAAAACA CGCTGATTTT
AACGCTTTGG TGGCGGATAT CGGCCTAGGC AATGAACTCA GCGCCATCGT CGCTAGGCGT
TTACTCGGTG AAGCGGCAGA AATTCCAGAC AGTGGTCGCA ACGTTGCTAT TCGAGGCACT
GAAGGGCTAT TGGTATCTTA TTCACGCTGT TGTCACCCCA TCCCAGGGGA TGAAATTGTG
GCTGTGCTTA GCCCAGGTCG CGGCATGATG ATTCACCAAG CGGGTTGCAG TAACATTCGT
AAACTGAGTA AAGAAGAGCC CCAGCGGGTG CTTGTTATGA AGTGGGATGA TGAACCTCAA
GGTGAATTTA AAGCTGCGCT ACGAATCGAA TTAATAAATC ATCAAGGGAC GCTCGCCAAT
TTAACCAATA ATGTGGCTTC GTGTGGCTCT AATATCGTCG GTTTACAAAC CGAAGAAAAA
GAAAGCGGTA TCTATTACAT TGATATAGAA CTGACCATCA CAGATCGTAT TCAGCTCGCT
GATGTCATGC GAAAAATTCG CATCATGCCC GAAGTTCAAA GGGTTTCAAG GCACAGCCAA
TCTAAGCAGA ATAAATCACC TAACGTATAA
 
Protein sequence
MYLFEGLKQK LEAYLPPDKV AETQRAFVVA QEAHDGQMRS SGDPYITHPV AVAGILADMR 
LDHETLMAAL LHDVIEDTHH NKESLSEQFG ETVGELVEGV SKLEKIHFSS KQEAQIENFR
KMLMAMVQDI RVILIKLADR THNMRTLGSL RPDKRRRIAR ETLEIYSPIA HRLGIHDIKN
ELEDLGFQAM YPMRHRALKA AVKQARGNRK EIIENIHKEV ETRLAAFGMN ALTIGREKHL
YSIYRKMKNK ELMFNEVMDI YAFRVVVDSA DNCYRALGAM HGLYKPIEGR FKDYVAIPRT
NGYQSLHTSL IGPHGIPVEI QIRTAEMDKM ADIGVAAHWM YKDDSESSDT TAQVRARKWM
QSLIELQQSA SSSFEFIENV KTDLFPDEIY VFTPDGRIIE LPLGATAVDF AYAVHTGVGN
TCVGVKVERR TYSLSKPLEN GQTVEIITSP RAKPNASWLN FVVSARARSH IRHYLKHQRS
EEAFSMGNRL LRHALGKTKL DEIPQADIDR VVEETKHADF NALVADIGLG NELSAIVARR
LLGEAAEIPD SGRNVAIRGT EGLLVSYSRC CHPIPGDEIV AVLSPGRGMM IHQAGCSNIR
KLSKEEPQRV LVMKWDDEPQ GEFKAALRIE LINHQGTLAN LTNNVASCGS NIVGLQTEEK
ESGIYYIDIE LTITDRIQLA DVMRKIRIMP EVQRVSRHSQ SKQNKSPNV