Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0245 |
Symbol | |
ID | 4173992 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 287391 |
End bp | 288458 |
Gene Length | 1068 bp |
Protein Length | 355 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638053244 |
Product | uroporphyrinogen decarboxylase |
Protein accession | YP_659831 |
Protein GI | 109896576 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATTCGT TAAAAAACGA TCGTTATCTA CGCGCTTTAC TTCGCCAACC AGTCGATGTC ACCCCTGTGT GGATGATGCG CCAAGCAGGC CGTTATTTGC CTGAGTATAA AGCAACGCGC GCGCAAGCCG GTGATTTCAT GTCATTGTGT AAAAATGCAG AGTTGGCATG CGAGGTGACG CTACAACCTC TTCGTCGCTT TGATTTAGAC GCCGCTATAC TGTTTTCTGA CATACTCACT ATCCCAGATG CAATGGGCTT AGGATTGTAT TTCGAGCAAG GGGAAGGCCC GAAATTCTCT AAACCAATTA CATCTATGGC GGACATCCAA AATCTACCCG CACCGGATCC TGAGCAAGAA CTGCAATATG TGATGAATGC AGTGCGTACC ATTCGTAAAA ACTTGCAAGG TGAAGTACCA CTTATTGGTT TCTCTGGCAG CCCCTGGACG CTAGCCACTT ACATGATTGA GGGCGGTTCC AGCAAGGCGT TTACTAAGAT TAAAAAGATG GCGTTTAGCG ATCCTCAAGC GCTGCATTTA TTACTCGATA AACTCGCTGA CTCTGTCATT TTATATCTTA ATGCTCAAAT CGATGCTGGC GCTCAATCCG TCATGGTGTT TGATACTTGG GGCGGTGTAT TATCGCCTCG CGACTATCAA GACTTTTCAC TGCAATATAT GCATAAAATT GTTGATGGGT TAACCCGTGA AAATGATGGG CGTAAAGTAC CTGTCACCTT ATTCACCAAA AACGCTGGTA TGTGGTTAGA GTCCATAGCC GCGACGGGTT GTGATGGAGT AGGCTTAGAT TGGACTATCG ATATCGACAA CGCTAAAGCC CGCGTGGGTG ATAAGGTTGC TTTACAAGGT AATATGGACC CATCCATGCT TTATGCCGCA CCAGAGCGGA TAGAGCAAGA AGTACAGAAA ATACTAGCAG GATTCGGTGA AGGCCCAGGG CACGTGTTTA ATTTAGGGCA CGGCATTCAT TTAGATGTTC CCCCCGAAAA CGCTAAAGTA TTTGTCGACG CAGTGCATAA ATACAGTGCT CAGTATCACA AAGGCTAA
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Protein sequence | MNSLKNDRYL RALLRQPVDV TPVWMMRQAG RYLPEYKATR AQAGDFMSLC KNAELACEVT LQPLRRFDLD AAILFSDILT IPDAMGLGLY FEQGEGPKFS KPITSMADIQ NLPAPDPEQE LQYVMNAVRT IRKNLQGEVP LIGFSGSPWT LATYMIEGGS SKAFTKIKKM AFSDPQALHL LLDKLADSVI LYLNAQIDAG AQSVMVFDTW GGVLSPRDYQ DFSLQYMHKI VDGLTRENDG RKVPVTLFTK NAGMWLESIA ATGCDGVGLD WTIDIDNAKA RVGDKVALQG NMDPSMLYAA PERIEQEVQK ILAGFGEGPG HVFNLGHGIH LDVPPENAKV FVDAVHKYSA QYHKG
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