| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0232 |
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| Symbol | |
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| ID | 4171719 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 275387 |
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| End bp | 276964 |
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| Gene Length | 1578 bp |
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| Protein Length | 525 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638053231 |
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| Product | general secretory pathway protein E |
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| Protein accession | YP_659818 |
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| Protein GI | 109896563 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCTCTG ATTCAACGAT CACAGAATCA ATAAGTACTG TGGAAGCCGA AGAGCAGGCC
CTCGTTGCTG CGGGCACAGA TGTAGATGCC CCCATAGAAG ATGCTGAACA CAAGCAGCTT
GCGTTCAGTT TCGCTAAGCG CCATAAAGTG CTGCTAGAAA CCGCGGAAAC GCCTGCACTG
CTTTATCATA CCAATGAGAC AGACTTTGCT ATTTTTGCTG AAGTCAGGCG CTTTTTGGGG
CAGCCTTTTC AATTGCGAGA AATTGAAAGC GGCCAGTTTG AAACGTTACT GACCAGCGCA
TTTCAGCGCG ACTCGTCAGC GGCTAAACAG CTAATGGAAG ATATTGGCAA TGAAAGTGAT
TTATTTGCGC TTGCCGAAGA GTTACCTGAC ACAGAAGACT TGTTAGAAAG TGAAGATGAT
GCACCGATCA TCAAATTGAT TAACGCCATG TTGGGCGAAG CCATCAAAGA AGGCGCATCT
GATATTCATA TTGAAACCTT TGAAACCCAG TTGTTGGTGC GCTTTAGGGT TGACGGTGTA
TTACGAGAAA TTTTAAAACC GAATCGTAAG ATGGCTTCAA TGTTGGTGTC TCGTATTAAG
GTTATGTCGA AAATGGACAT TGCCGAGAAG CGTGTTCCCC AAGATGGACG CATTACCTTA
CGCATTGCCG GTCGAGCGGT TGATGTGCGG GTATCGACCA TGCCATCAAG CCACGGTGAG
CGCGTGGTGC TGCGTTTGCT TGATAAGAAT AATGTACGCT TAAATCTTGA AGATCTAGGG
ATGACCAAAG TTAACCGCGG GCATTTCTCC GGTCTTATTC GTAAGCCCCA TGGCATTATT
TTGGTGACTG GCCCTACAGG TTCTGGTAAA TCCACAACCT TGTATGCGGG ATTAAGCGAA
ATCAACTCAA AAGATCGTAA TATTCTTACC GTTGAAGACC CAATAGAATT TGATTTACAA
GGCATAGGGC AAACCCAAGT CAATGCTAAA GTCGACATGA CATTCGCACG AGGCTTGAGG
GCGATTTTAC GTCAGGATCC TGATGTGGTT ATGGTTGGGG AAATCCGAGA CTTAGAAACC
GCGCAAATTG GTGTGCAAGC CAGTTTAACA GGCCATTTGG TGATGTCGAC ACTGCATACC
AATACCGCTG CAGGGGCGAT TACGCGCTTG GAAGATATGG GCATAGAGCC ATTCTTGTTG
TCGTCTAGTT TATTGGCTGT TTTATCACAG CGCTTAGTAA GAACCTTGTG CCCACAATGT
AAAACCACCC ACGAACCTAG CGCCCAAGAG TGCAGTATTT TAGGTGTGGC TATTGGCAGC
GAAGCCAGTC ATCAGGTGTG TCGACCTAAA GGTTGCGCGG CGTGCAACCA TACTGGTTAT
CGCGGGCGTA CCGGTATTCA CGAATTATTG ATTGTCGATG AAGGCATACG CGAGCTGATC
CATAACGGTC ACGGCGAGCA AGCTATTGAA AAATACATAC GTCAAAATAC GCCTAGCATT
CGTGATGATG GTTGTCGAAA AGTCTTGAGC GGAGAAACTT CACTAGAAGA AGTCCTGCGT
GTAACGCGAG AAGACTAG
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| Protein sequence | MSSDSTITES ISTVEAEEQA LVAAGTDVDA PIEDAEHKQL AFSFAKRHKV LLETAETPAL
LYHTNETDFA IFAEVRRFLG QPFQLREIES GQFETLLTSA FQRDSSAAKQ LMEDIGNESD
LFALAEELPD TEDLLESEDD APIIKLINAM LGEAIKEGAS DIHIETFETQ LLVRFRVDGV
LREILKPNRK MASMLVSRIK VMSKMDIAEK RVPQDGRITL RIAGRAVDVR VSTMPSSHGE
RVVLRLLDKN NVRLNLEDLG MTKVNRGHFS GLIRKPHGII LVTGPTGSGK STTLYAGLSE
INSKDRNILT VEDPIEFDLQ GIGQTQVNAK VDMTFARGLR AILRQDPDVV MVGEIRDLET
AQIGVQASLT GHLVMSTLHT NTAAGAITRL EDMGIEPFLL SSSLLAVLSQ RLVRTLCPQC
KTTHEPSAQE CSILGVAIGS EASHQVCRPK GCAACNHTGY RGRTGIHELL IVDEGIRELI
HNGHGEQAIE KYIRQNTPSI RDDGCRKVLS GETSLEEVLR VTRED
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