Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0225 |
Symbol | ompR |
ID | 4171712 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 268013 |
End bp | 268735 |
Gene Length | 723 bp |
Protein Length | 240 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638053224 |
Product | osmolarity response regulator |
Protein accession | YP_659811 |
Protein GI | 109896556 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGACAAG AAACCACAAA AATTTTAGTA GTAGACGATG ATATGCGTTT ACGCAGCTTG CTTGAACGCT ATTTGGTTGA GCAGGGTTAT CAGGTGCGAG CGGCTGCCAA TGCAGAACAA ATGGATCGCA TGCTAGAACG TGAGAATTTC CATTTGATGG TACTTGATTT GATGTTGCCT GGGGAAGATG GCTTGTCTAT TTGCCGCCGC TTACGTCAAA AAGAAAATGA AATTCCTATT GTGATGCTAA CGGCCAAAGG CGATGAAGTT GATCGTATTA TCGGTCTTGA AATGGGCGCA GATGATTATT TACCCAAGCC CTTCAACCCT CGTGAGTTAT TGGCTCGGGT GAAAGCGGTG TTACGCCGAA AAGTCGTTGA AGCACCTGGT GCGCCGTCTC ACGCTGAGCA AATTGTTGAG TTTGGCAAGT TCAAATTGAA TTTGGGCACG CGTGAAATGT CGAGTGAAGG TACGCCAATG ACATTGACCA GTGGCGAGTT CGCTGTGCTT AAATCTTTGG TCACTCATCC TCGCGAGCCG TTATCGCGGG ATAAATTAAT GAACTTAGCG CGTGGCCGTG ATTACAGTGC ACTCGAGCGT AGCATCGACG TGCAAGTATC TCGTTTACGC CGCATGCTTG AAGAAGACCC TGCAAACCCG CGTTATATTC AGACCGTATG GGGCCTAGGT TACGTTTTTG TACCAGACGG TGGTGGAGCC TAG
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Protein sequence | MGQETTKILV VDDDMRLRSL LERYLVEQGY QVRAAANAEQ MDRMLERENF HLMVLDLMLP GEDGLSICRR LRQKENEIPI VMLTAKGDEV DRIIGLEMGA DDYLPKPFNP RELLARVKAV LRRKVVEAPG APSHAEQIVE FGKFKLNLGT REMSSEGTPM TLTSGEFAVL KSLVTHPREP LSRDKLMNLA RGRDYSALER SIDVQVSRLR RMLEEDPANP RYIQTVWGLG YVFVPDGGGA
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