| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0173 |
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| Symbol | |
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| ID | 4174037 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 203761 |
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| End bp | 205674 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638053172 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_659759 |
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| Protein GI | 109896504 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCCTA AAGCCAAAAT TCGCTTAGGC GATCTTCTTG TACAAGAAGG GATTATTAGC
GAAGAACAAT TGATGCAGAC TCTTTCTGCA CAAAAGCAAA GTGGCCGTAA ATTAGGTTAC
ATGCTTATTG AACTTGGCTT TATGACCGAG AATCAGTTGC TTACCTTTTT ATCTCAGCAT
TTGGGTGTGC CATTAATTGA TGTAACCCAA TATCGGGTGT CGGTAGAAGC GGTATTGCTA
CTGCCAGAGG TTCAGGCTCG ACGTTACAGA GCGTTAGTGC TTGACGATAA AGGGGATCAT
TTACTGGTCG GTATGAGTGA CCCCGCTGAT TTGGCCGCTC TTGATATTTT ATCTGGTGTG
TTACCCAAAC CTGTTAAAGT CGCTGTTGTT AGTGACGCGC AATTGTTCCA AGCGTACGAT
CGTTTCTACC GTCGTACGGA AGATATCGCT TCTTTCGCCC AAGAGTTAGC GGAAGAATAC
CAAGATGATG AAGAGTTTGA TTTCGATACA GGCGTCGACA ATGAGCAAGA CACTGCCGTA
GCCCGTTTAC TGCAATCGAT TTTTGAAGAT GCACTACAAA CCAAAGCCTC AGATATCCAT
ATCGAACCGG ACAGCGAGAT GTTACGTATT CGCTTAAGGG TGGATGGCGT ACTGCAAGAA
AACATCATCA AGGAAAAGAA CATAGCCTCA GCCTTAGTAT TAAGGTTGAA GCTAATGTCT
GGGCTCGATA TTTCAGAGAA ACGCCTTCCA CAGGATGGGC GGACGAATAT GCGTATCAAA
GGCCACTCCA TCGATGTACG GGTCTCTACT ATGCCAGTAC AGAATGGTGA ATCAGTGGTG
ATGCGATTGC TTGATCAGTC AGCCGGTGTG CTTTCTCTCG AGCAAACCGG TATGCCAGCC
GCCTTACTAA AACGCTTTCG AGTGTTATTG AGACGCCCCC ACGGTATGAT TTTGGTTACG
GGACCCACAG GCTCTGGTAA AACAACCACG CTTTACGGTG CGTTAAGTGA GTTAAATCAG
CCTTCTGCTA AAATTATCAC AGTAGAAGAC CCCGTCGAGT ACCGCTTACC ACGCATCAAT
CAAGTGCAGA CCAATAGTAA GATTGGCTTG AATTTCTCCA ATGTTTTACG CACAACACTA
AGGCAAGATC CTGACATCAT CATGGTCGGG GAAATGCGAG ACCAAGAAAC GGCGGAAATT
GGTCTTCGAG GCGCTTTGAC GGGTCACTTA GTGTTATCAA CCTTGCATAC CAATGATGCT
ATCAGCAGTG CGGTACGTCT ACTTGATATG GGAGCCCCAG GGTATTTAGT GGCGAGTTCT
TTGCGCGCTG TTATCGCCCA GCGCTTGGTG CGTAAAGTGT GTGAAAGCTG CAGTGAGGCA
TACCAACCCA CACGCGAAGA ATCCTTGTGG CTGAAAAGTA TCGACTCTCA AGTGGTTAAT
GTGACGTTTC GCCGCGGCCG TGGCTGTCAA ACCTGCAACA ATACAGGCTA TCGCGGCCGA
GTAGGTGTGT TTGAGTTATT AGAAATGACA GAGAGCATGA TGAATGCATT GAAAACCAAT
GACTCTGTTC AGTTTGGCCA AGCTGCACTT CACAGCCCTG GCTTCGTGCC TTTGGCAAAA
GTTGCATTAA CGTATGCCAA AATGGGGATA ACCACCGTCG ATGAAGTATT GAAACTGATT
GAAATGGTGG CTGATGAACA AGCACGAGAG CCAGGGCTAG AAGAAAACGC TGAACTTGTT
GAAATGACAG AGACTCAATC CAGCCAAGCT GCCTCGCATG AGGGGAATGC AGAGTCTGGC
GCATCGCCCA CTTCAGCGGC TCGCTCTGAG AATAATAAAC CGACTCCATC AAGTGGTGAG
TTCTCTTTCG AGCTAGAGCC TCGCGACGAT GGCCCAGGCG GTAACAATGG CTAA
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| Protein sequence | MKPKAKIRLG DLLVQEGIIS EEQLMQTLSA QKQSGRKLGY MLIELGFMTE NQLLTFLSQH
LGVPLIDVTQ YRVSVEAVLL LPEVQARRYR ALVLDDKGDH LLVGMSDPAD LAALDILSGV
LPKPVKVAVV SDAQLFQAYD RFYRRTEDIA SFAQELAEEY QDDEEFDFDT GVDNEQDTAV
ARLLQSIFED ALQTKASDIH IEPDSEMLRI RLRVDGVLQE NIIKEKNIAS ALVLRLKLMS
GLDISEKRLP QDGRTNMRIK GHSIDVRVST MPVQNGESVV MRLLDQSAGV LSLEQTGMPA
ALLKRFRVLL RRPHGMILVT GPTGSGKTTT LYGALSELNQ PSAKIITVED PVEYRLPRIN
QVQTNSKIGL NFSNVLRTTL RQDPDIIMVG EMRDQETAEI GLRGALTGHL VLSTLHTNDA
ISSAVRLLDM GAPGYLVASS LRAVIAQRLV RKVCESCSEA YQPTREESLW LKSIDSQVVN
VTFRRGRGCQ TCNNTGYRGR VGVFELLEMT ESMMNALKTN DSVQFGQAAL HSPGFVPLAK
VALTYAKMGI TTVDEVLKLI EMVADEQARE PGLEENAELV EMTETQSSQA ASHEGNAESG
ASPTSAARSE NNKPTPSSGE FSFELEPRDD GPGGNNG
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