| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0171 |
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| Symbol | |
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| ID | 4174035 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 201738 |
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| End bp | 202646 |
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| Gene Length | 909 bp |
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| Protein Length | 302 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638053170 |
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| Product | MSHA biogenesis protein MshM |
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| Protein accession | YP_659757 |
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| Protein GI | 109896502 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3267] Type II secretory pathway, component ExeA (predicted ATPase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATTTAT ACCACTACGG TATAAAGGAA TTGCCTTTTA CCTTAACCCC TAATACCAGC
TATTTCTTTG GCTTGCCTAG CCATAAAGAA GCGATTGAGG TGCTTCTCAC TGCCATTAAA
ACGGGAGAGG GATTTATTAA AGTGACCGGC GAAGTGGGTA CGGGCAAAAC GTTGATCTGT
CGCAAGTTAC TTAACGAACT TCCAGAGCAC TTCGTCGCGG CATATATTCC GAACCCTTAT
TTAACGCCAA GTGAATTGCG CCGCTCTGTT GCCGCTGAAC TTAATGTGAC ATTAAGCGAA
AACGCAGATC AACAAGAGTT TACTCAGCGT ATCCAGCGCC GTTTGATTGA AATTAACCAA
CAGAATCGCG GAGTCGTTCT TATTATTGAT GAGGCTCAGG CATTGCCGGT AGAGAGTATC
GAAGCATTGC GTTTAATCAC TAATTTAGAA ACTGAGTCGC GAAAATTATT GCAGGTAGTG
CTGTTTGGTC AACCAGAGCT AGACGACAAA CTTGCCCTAC CTGAATTGCG CCAGTTAAAA
CAGCGGGTCA CTTTTTCCTA TGCGCTTAAG CTTATGAATG CTGACCAGTT GTTCCAGTAT
GTGCGTCATC GCATGTCTGT TGCCGGATAT CGAGGGGGAG ATATTTTCTC TAACCGAGCG
TGCAAACTAT TGTTTAAAGC CAGTAAAGGT ACTCCGCGGA TCGTGAATGT GTTATGCCAC
AAAGCGTTGA TGTTGGCGTA TGGTGAAGGC AAACAACAGG TGGAAATTAA GCACGTGAAA
TTAGCCATAG CAGACACGGA AGCAGCTTAT AAAATGGGCT TCGGTATGGG GAAATTCGTT
GTCGTTACCT TACTTGCTAT CTGCATCGCA CTGGGTGGGT ATATGGCGTA TCAGAGGTTT
ACCTTATGA
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| Protein sequence | MYLYHYGIKE LPFTLTPNTS YFFGLPSHKE AIEVLLTAIK TGEGFIKVTG EVGTGKTLIC
RKLLNELPEH FVAAYIPNPY LTPSELRRSV AAELNVTLSE NADQQEFTQR IQRRLIEINQ
QNRGVVLIID EAQALPVESI EALRLITNLE TESRKLLQVV LFGQPELDDK LALPELRQLK
QRVTFSYALK LMNADQLFQY VRHRMSVAGY RGGDIFSNRA CKLLFKASKG TPRIVNVLCH
KALMLAYGEG KQQVEIKHVK LAIADTEAAY KMGFGMGKFV VVTLLAICIA LGGYMAYQRF
TL
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