| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0128 |
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| Symbol | |
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| ID | 4172155 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 152568 |
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| End bp | 155183 |
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| Gene Length | 2616 bp |
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| Protein Length | 871 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053127 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_659714 |
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| Protein GI | 109896459 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGGCGGCC CCGCACTCGA CTCGACAGCC CACTTTACAA CATTGGTTTT TATGATTAAC
GAAGAATATA TGACACAAAT GAAGACATTA CCCCTAACTG GAACATGGCA GTTTTGCCAA
GCCGATAAGC AAGACTGGCG AAATGCAGAG GTTCCAGGGT GTAATTTTAC TGACTTGCTC
GCTCACAATT TAATAGACGA TCCGTTTGAC CGAGACAACG AATCCCATTT GCAGTGGATT
GAGAAAAAGG ACTGGCATTA TCGCCGTTCA TTTAATGTAT CAGCGGCGCA ATTGGCCCAC
AGCGAGGTTA ATCTAGTCGC CCTAGGGCTG GATACGTTTT GTGATATTTA TCTCAATGGG
CAGCACCTCG CTAGCGGGCA GAATATGTTT GTGGGTCAAC ACCTTGCTTG TAAGTCTTTG
CTGGTAGAAG GTGAAAATGA CGTGGAAATT CGTTTTCGCT CACCCATGAA CGAAGTGTAT
CCACAATTTA TAGCTAACGG TTTTACCTAC CCAGCGGAAA ACGACAAAAG TGACGAGAAG
CTCAGTGTCT TTTGTCGCAA AGCACCTTGT CATTTTGGTT GGGATTGGGG GCCGAAGTTC
GTGACGTCTG GCATTTGGCG CGACATTTAT TTAGCGTTTA TCGACAGTGC TGAAATCAAA
GACGTACATT TTGTACAGCA GGCGTTGTCA GCACAGCGCG CTGATTTTCA TTTTGCATTA
GACGTCAGCG CGATGACAGA TTTTGATGCC CAACTAGTGG TGAAGTGCGA ACAGGCCCCG
CAGTTGAATC AAACCTTAGA TGTGCGTTTA ACGGCCCAGG CTAACGAGCA AAGCATGCTG
GTTAACTTCA CGCTTACCGA TCCTAAGCGC TGGTGGCCTA ATGGGTTAGG GGAGGCATTT
TTATATGACT TTAGCTTTGA GTTAGTCAAG GATAAGCAGG TTATAGCCCG TCGCGAGCAA
GCTGTGGGGC TGCGGGAAAT AGAAGTGGTA AACCAAGCTG ATGAAATGGG GGAGTCATTC
TATTTCAAAG TAAACGGTCA CCCCGTCTTT ATGAAAGGCG CGAACTACAT TCCGGATGAC
AGTTTTATTC ATCGAGTTAA TACCCAGCGA CATGAGCAAG TGTTTGATGC CGTGGTGGCA
GGCAATATGA ATATGTTGCG AGTGTGGGGC GGCGGCATTT ATCAAGACGA TGCTTTTTAC
GAACTAGCGG ATCGCAACGG CATTTTGATT TGGCAAGACT TCATGTTTGC CTGCACTTTA
TACCCAGCAG ATGACGCGTT CTTGGCAAAT GTGAAACAAG AAGCGGAATA TAACGTTAAA
CGTTTGCGTA ACCACCCGTG TATCGCTATG TGGTGTGGCA ACAACGAAGT CGATATGGCC
ATCGAAAAAT GGCAGTGGGC TGAAAAGTTT GGCTATTCTG ATGAGCTGTA CGGGAGACTT
AAACAAGATT ACATACGTTT GTTCGATGAC TGCTTACCCA AGGTCATTAA CACGCTTGAT
GCGCAGCGCT TTTATTTGCG TTCTTCACCC ATAGGTTTTT GGGAAAACGA CGAAGACAAC
AAAGCTAATC ATCACTACTG GGGCGTATGG CACGGTGAAG AGCCGTTCAG TGAATATAAA
AAGCGTGTGC CACGCTTTAT GAGTGAATAC GGTTTTCAGT CGTTTCCTAT TGCTGAATCA
ACCCACACGT TTACCCGGCC TGAAGATCGC GAACTTGAAT CAGCCGTGAT GCAGGTGCAT
CAAAAGCACC CGCGTGGCAA TAAGCTTATC CGTAGCTATA TGGATGAAGA GTTCAATGCG
CCGAGAGATT TCGATCAGTT ATTGTATTTA AGCCAAGTTC AACAAGCCCT TGGATTAAAA
ATGGCGTTTG AAGCGCATCG CAAAGCCATG CCATTTTGCA TGGGAACCCT GTATTGGCAA
TTGAATGATA CTTGGCCGGC TGCGTCATGG TCTGGTATCG ATTATTATGG TCGTTGGAAG
GCGCTGCACT ATCAAGCGAA ACGCAGCTTT GCCCAACAAT TATTGGTGAT TGACCAAGTG
AATGATCAGC TTGAGGTCAC CTTGATTTCT GATGATTTAC AGCCTTTTTC CGCTCAATTG
CACATTCAAG TTTATGACTT CGATGGGTTG GTGGTGTATT CCCATGAGCA AGATGTGCTT
GTGCCGGCTA ATGCGTCTTT GTCGCTTACT TCGCTTGCTA TGTCAGAACT TGCCTCACAA
GCTCAGCCCA GTAGCTCTGT GTTAGTTGCG CGCTTAATGC ATCAAGATGG CCGAGTGCTT
AGCCAAAATA GTCACTTTTT TGTAGCCAAC AAGGACTTGG CCTTGCAAGC TGCTGATATA
CAGTGCGAAC AGGTTATTAC GCCTGAGTGT TTAACGCTGA CGTTTAGCAG CGACACTTTC
GTTCGTCAGT TGTATGTCAG TGCCGGCGAG CAAGTCGGCA ATTTTAGTGA TAACTTTTTT
GATCTGATCC CCGGAATCGA CGTCTCGATT CACCTTGCGC TGCCGGGCCT AGATCAACAA
GATATTGAGC GCCTTGGGGC TAAGGTAAGC TGGCAATCGC TACTTGATAG TTTTGCTTCA
TTAAGCAATG AGCAACGTAA TATAGCTGGG TTATAG
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| Protein sequence | MGGPALDSTA HFTTLVFMIN EEYMTQMKTL PLTGTWQFCQ ADKQDWRNAE VPGCNFTDLL
AHNLIDDPFD RDNESHLQWI EKKDWHYRRS FNVSAAQLAH SEVNLVALGL DTFCDIYLNG
QHLASGQNMF VGQHLACKSL LVEGENDVEI RFRSPMNEVY PQFIANGFTY PAENDKSDEK
LSVFCRKAPC HFGWDWGPKF VTSGIWRDIY LAFIDSAEIK DVHFVQQALS AQRADFHFAL
DVSAMTDFDA QLVVKCEQAP QLNQTLDVRL TAQANEQSML VNFTLTDPKR WWPNGLGEAF
LYDFSFELVK DKQVIARREQ AVGLREIEVV NQADEMGESF YFKVNGHPVF MKGANYIPDD
SFIHRVNTQR HEQVFDAVVA GNMNMLRVWG GGIYQDDAFY ELADRNGILI WQDFMFACTL
YPADDAFLAN VKQEAEYNVK RLRNHPCIAM WCGNNEVDMA IEKWQWAEKF GYSDELYGRL
KQDYIRLFDD CLPKVINTLD AQRFYLRSSP IGFWENDEDN KANHHYWGVW HGEEPFSEYK
KRVPRFMSEY GFQSFPIAES THTFTRPEDR ELESAVMQVH QKHPRGNKLI RSYMDEEFNA
PRDFDQLLYL SQVQQALGLK MAFEAHRKAM PFCMGTLYWQ LNDTWPAASW SGIDYYGRWK
ALHYQAKRSF AQQLLVIDQV NDQLEVTLIS DDLQPFSAQL HIQVYDFDGL VVYSHEQDVL
VPANASLSLT SLAMSELASQ AQPSSSVLVA RLMHQDGRVL SQNSHFFVAN KDLALQAADI
QCEQVITPEC LTLTFSSDTF VRQLYVSAGE QVGNFSDNFF DLIPGIDVSI HLALPGLDQQ
DIERLGAKVS WQSLLDSFAS LSNEQRNIAG L
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