| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0090 |
|---|
| Symbol | |
|---|
| ID | 4172862 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 103571 |
|---|
| End bp | 104920 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638053089 |
|---|
| Product | acetyl-CoA carboxylase, biotin carboxylase |
|---|
| Protein accession | YP_659676 |
|---|
| Protein GI | 109896421 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0439] Biotin carboxylase |
|---|
| TIGRFAM ID | [TIGR00514] acetyl-CoA carboxylase, biotin carboxylase subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGATA AAGTACTGAT TGCCAATCGC GGTGAAATTG CGCTTCGCAT CTTGCGTGCC
TGTAAAGAGT TAGGCATCAA GACAGTCGCA GTGCACTCCA CCGCAGATGA AAGTTTAAAG
CACGTGCTTT TGGCTGACGA AACCATTTGT ATCGGTAAGC CATCTGCAAC CGAAAGTTAC
TTAAACATTC CGCGTATTAT CGCAGCGGCA GAAGTCACTA ACTCAGTGGC TATTCACCCT
GGTTACGGCT TTTTAGCAGA GAATGCTGAT TTTGCCGAAG CGGTTGAACG TAGCGGGTTT
ATTTTCATTG GACCAAAAGC TGAAACCATA AATTTGATGG GCGACAAAGT GTCGGCAATC
AAATCGATGA AGGCGGCCGG AGTACCTTGT GTACCGGGTT CTGATGGGCC ATTGAATGAT
GATGAAGCGC GCAATAAAAA GTTAGCCCAA GGCATCGGTT ATCCGATTAT TGTCAAAGCC
GCTGGTGGCG GTGGCGGCCG TGGTATGCGC GTTGTTCGCA GTGAAGAAGA GCTAATCGGT
GCTATTGCAG CAACGAAAGG CGAAGCAGCC GCCGCGTTCA ACAACGATGT GGTTTACATG
GAGAAGTTCC TTGAAAACCC TCGCCACGTT GAAATTCAAA TTTTGGCTGA TGGTCAAGGT
AGCGCAATTC ATTTAGGTGA GCGTGACTGC TCTATGCAGC GTCGTCACCA AAAGGTGGTT
GAAGAAGCGC CAGCGCCAGG CATTACTGAA GAAATGCGCG CCAAAATTGG TGCCCGTTGT
TGCCAAGCAT GTATCGATAT CGGATACCGC GGAGCAGGTA CGTTTGAATT CTTGTTCGAA
AATGGTGAGT TTTATTTCAT TGAAATGAAC ACCAGAATTC AGGTTGAGCA TCCAGTATCA
GAAATGATCA CGGGTGTCGA TTTGATCAAA GAGCAATTGC GTATTGCGGA CGGCCAAAAG
CTAACGATTT CTCAAGAGCA GATCCAAGTG CGTGGGCATG CGATTGAATG TCGTATTAAT
GCTGAAGATC CAGACACTTT CATACCAAGC CCAGGTAAAA TTAATATGTT TCACCCACCT
GGTGGCTTAG GTGTGCGTTG GGATTCACAT ATTTATGCGG GTTATTCCGT ACCGCCTAAC
TATGACTCTA TGATTGGTAA GTTGATTACA TACGGTGAAA CCCGTGAAGT GGCGATTGCT
AGAATGCGCC ACGCATTAGG CGAGCTGGTC ATTGAAGGTA TAAAAACCAA TATTCCATTA
CAACAGCGTA TTATGGCCGA TGAAGCCTTT GCCGCTGGTG GTGCGAATAT TCACTATCTT
GAGAAGAAAC TAGGCCTTGG TGGTCACTAG
|
|---|
| Protein sequence | MLDKVLIANR GEIALRILRA CKELGIKTVA VHSTADESLK HVLLADETIC IGKPSATESY
LNIPRIIAAA EVTNSVAIHP GYGFLAENAD FAEAVERSGF IFIGPKAETI NLMGDKVSAI
KSMKAAGVPC VPGSDGPLND DEARNKKLAQ GIGYPIIVKA AGGGGGRGMR VVRSEEELIG
AIAATKGEAA AAFNNDVVYM EKFLENPRHV EIQILADGQG SAIHLGERDC SMQRRHQKVV
EEAPAPGITE EMRAKIGARC CQACIDIGYR GAGTFEFLFE NGEFYFIEMN TRIQVEHPVS
EMITGVDLIK EQLRIADGQK LTISQEQIQV RGHAIECRIN AEDPDTFIPS PGKINMFHPP
GGLGVRWDSH IYAGYSVPPN YDSMIGKLIT YGETREVAIA RMRHALGELV IEGIKTNIPL
QQRIMADEAF AAGGANIHYL EKKLGLGGH
|
|---|
| |