Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0071 |
Symbol | |
ID | 4171771 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 82673 |
End bp | 85264 |
Gene Length | 2592 bp |
Protein Length | 863 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638053069 |
Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
Protein accession | YP_659657 |
Protein GI | 109896402 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.213956 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAATA TTCCCGATAA CTTATCCATT GAAGAGTTAC GTGAATTAGT TCCTCAATTA CAACAACTTA CTGAAAAATA TAAGCATTCA GAAGCCATTC AAAAATCCCT TTTTGATATC TCTGAATTAG CGAGCTCAGT AGGAGAGTTG TCACGTCTAT ACCCCGCTAT CCACGACATC ATTGGTCGCT TTATGAATGC CCAGAACTTT TATGTGGCGT TCTACGATCA AGTCGATGAA GTTGTCGACT TCGTGTATTT TGTAGACCAG TTTGACGAAG TAGCGTTGCG TCAAATCCCC GCAAGTGAAT TAATGGAAGG TTTTACAGGC TATGTGTTAC GCACCGGTGA CTATTTATTT TTAACTGAAG AAACCCGCGA GACTCAGCTC AATCAAATTA ACGTAAAACA GATAGGTTCC GGTCCTGTTG ATTGGATTGG CGTACCTTTA AAGCGTGGTA ACCAAGTGAT TGGCGCCATG GTGGTGCAAA GTTACGATAA ATCTATTCGC TATAACCAAG AAGATTTAGA CATTCTGCTG TTTGTTTCGC AGCATATCGT TAATACCGTC GACAGGGTAA AAAGCCGCGA AATGAATGAG CAAACTATTC GTGAGCGCAC CAAGCAACTT CAGAACATTA ACGAAGAATT ACAAGAAGAA ATTAACGAGC GCCAAAAAGT AGAATCGCTG CAAAATGCTC TGTTCGAGAT ATCAGAGTTG TCAGCCTCGG TAGACGGCAA CATGGCGGAT TTTTACGCTT CATTGCATGA AATTATTGCT CGGCTTATCA GTGCACCCAA CTGTTATATT GCCACTATTA GCGCGGATAA TACCCGTCTT GAATTTCCTT ATTATTCTGA TGAAATCAAC ACCGTCATAG AATCAAGAGA AATCGGTTTT GGTCTCACTG AATTCGTGCT TCGCTCTGGC AGTGCTGAGC TGATTAACCC TTCTAAGGTG AAAGAGCTCA CTGCAAATAA TGAAATAGAT GCCATTACCG CCAAGAATAT GATTGAACAG AACAATTCGT GGCTAGGCTC TCCACTTGTG GTAGACGGTG AGATATCGGG TGTTATTGCG ATCCAAAGCT ATAGCCAAAC TGAGCATTAC TCGTTACGTG ATCTGGAACT GCTGCGTTTT GTTTCCCATC ATATTGCCGT TGCATTAGAG CGTAAACGCT CGTCAGACGC GATCCAGGCG TATAACCAGC AACTTACTGA GAAAGTTAAA GAGCGCACTG AAGAGCTTAA CAAAGCCAAT CAATATCTAC AGAAGCAAAT CGAAGAGCGC AAAGCCATTC AGCAGAAACT GGTACACGAT GCTCATCACG ATGCCTTAAC AGATTTACCT AACCGCACCA TGTTTAATGC TCGATTGAGT CAGGCTTTGG CCAATAAGAA GCGCTATCAA CATAATAATT TTGCGGTAGT GTTTATTGAT TTAGACCGTT TCAAACAAAT TAACGACACC ATCGGCCATC ACGCAGGTGA TTCATTCTTG ATAGAGGTCG CTAGTCGAAT CAACCACTGT ATTCGAGGCC ATGATTTGCT TGCTCGTTTA GGGGGCGATG AGTTTGTGAT TTTGCTGGAT AATTTCGACT CCCCAGAAGA CGTTGAGATT ATCTCTACAC GTATTATCGA ATCAATTGCC ACACCATTTG TTTTAGATGG CCGAGAAATT TTCTCTGGCG CCAGTATTGG TATCGCATAC CTTGAAAGTG GTTACCGCTC AGCGAGTGAA ATAGTGCGAG ATGCTGACGC CGCTATGTAC CAAGCAAAGT CTCAAGGCCG CGGTCAGTAC GTAGTGTTTG ATTTAACCAT GCGCAAGAAG CTGCTTGAAG AGTTAGAAAT TGAAACTGAA TTTCGTAAAG CACTCAAAAA TGAAGCCTTT GATGTCTACT CACATCCAGT CTTTAATATG ACAGATAGTA CGCACTTATA CGATGAATGC AGAGTTCGCT GGGTACACCC TAAACTGGGT ATCATGGATC GTGACAGCTT TTGGCAAATT GCTGAACATA GTGGCCTGGT GGTTGAAATG GACAACTACA TGCTTAGAGC TGCGTATGCG ATGTTGAGCC AGCCACTGAC CTCTTATGCT AACAACGAGT ATTATAAAGT AGCCGTTAAT TTATCAATCC ATTATTTAAC CCATAGCGAA GCTGCTGTGC AGCTTATTCA AGATATTAGG GATAGGGGAA TTGATCCTAA GCGGCTAATT TTTGAGTTTG ACGAGAACGA TTTAAATCGA CGCTCCCAAT TTAGTCTGCC AGCGATTAAG CATTTAAAAC GATCAGGCAT TAAGTTGGTG CTGGACAATT TTGGCAGTGG CTTGGCATCG CTAAGTTACT TGTATTCTTA TCCGTTTGAT TTTGTCAAAG TCGATCATCG CTTTGTGAAG ACTATCCCAA GATCAGAGCG AAATTTAAAA CTCATACAAT CCGTATACGC CATGTCGGAA CAACTCAGCT TTAGGTTAAT CGTCTCAGGG ATCAGTGACA AAGAGCAAGT AGACCTACTG CGCTCAGTTG GCTGTCAATT GGGTCAAGGA CCCTATTTAG AAGCCCCATC TCAAGTAACA CTGCCGATTT AG
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Protein sequence | MSNIPDNLSI EELRELVPQL QQLTEKYKHS EAIQKSLFDI SELASSVGEL SRLYPAIHDI IGRFMNAQNF YVAFYDQVDE VVDFVYFVDQ FDEVALRQIP ASELMEGFTG YVLRTGDYLF LTEETRETQL NQINVKQIGS GPVDWIGVPL KRGNQVIGAM VVQSYDKSIR YNQEDLDILL FVSQHIVNTV DRVKSREMNE QTIRERTKQL QNINEELQEE INERQKVESL QNALFEISEL SASVDGNMAD FYASLHEIIA RLISAPNCYI ATISADNTRL EFPYYSDEIN TVIESREIGF GLTEFVLRSG SAELINPSKV KELTANNEID AITAKNMIEQ NNSWLGSPLV VDGEISGVIA IQSYSQTEHY SLRDLELLRF VSHHIAVALE RKRSSDAIQA YNQQLTEKVK ERTEELNKAN QYLQKQIEER KAIQQKLVHD AHHDALTDLP NRTMFNARLS QALANKKRYQ HNNFAVVFID LDRFKQINDT IGHHAGDSFL IEVASRINHC IRGHDLLARL GGDEFVILLD NFDSPEDVEI ISTRIIESIA TPFVLDGREI FSGASIGIAY LESGYRSASE IVRDADAAMY QAKSQGRGQY VVFDLTMRKK LLEELEIETE FRKALKNEAF DVYSHPVFNM TDSTHLYDEC RVRWVHPKLG IMDRDSFWQI AEHSGLVVEM DNYMLRAAYA MLSQPLTSYA NNEYYKVAVN LSIHYLTHSE AAVQLIQDIR DRGIDPKRLI FEFDENDLNR RSQFSLPAIK HLKRSGIKLV LDNFGSGLAS LSYLYSYPFD FVKVDHRFVK TIPRSERNLK LIQSVYAMSE QLSFRLIVSG ISDKEQVDLL RSVGCQLGQG PYLEAPSQVT LPI
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