| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0006 |
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| Symbol | |
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| ID | 4171831 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 7111 |
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| End bp | 8718 |
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| Gene Length | 1608 bp |
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| Protein Length | 535 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638053000 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_659593 |
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| Protein GI | 109896338 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGATAAATA TTAGCGGCAA AATTTATATT AAAGTAGCGC TTTCCATCGC TATTGGCGCT
ATAGGTACGT CGTTAATTAC ATCGGTGCTA CTTTATTTTA GTGCTGTTAG CAGCGAACAA
AGCAAAGCTG AGGCCCTTAT CGAGCAAATA GGGGCCACTA TTCGTAGCAC CGCATCTATC
GCTTTGTATG TTCAAGACGA AGAGCTTGGG CAAGAGATAG TGCAAGGCCT AGTTATTAAT
GACTTGATAG CTGGTGCACA ACTAACAGAT TCCCTTAGTC TAAAGGTAAG TTTCGGTGAC
CTAACCGATA CCGACGGTTT AATTCACACT AACGTTCAGC ATCCTTTTAT TCCAGAGCAA
TCCATTGGGC AGTTGCTAAT TCACCCAAAC CGTCATTACA TCCAAAGTAT TGCAAGACAA
AAAGCCACCA ATGACGCTTT ACTATTGCTA CTTTATTCAG CTATCGTCGC ACTCTTCGTT
TCTATTTTAG TACATAAACT ACTTACCCAA CCTATTCAGA ACCTTACCGC GAGTTTTCTT
AAGATTGACC CGAGAAATAC GCAAACGATG CGTACGTTGA TCCATCACGA TAACGATGAA
ATCGGACAAT TAGTTCAAGG TATTAATGAT CTAATGGGTG AATTGAAAGT CACTCTTGAA
AACGAAACTG ATTTACGTAA AAAAACTCAG GCGTTAGAAA GTAAGTTTAG ACTTATATTT
GAACAAGCCA GTGCTGGTAT TTGCTTAATT AATAGCAACA ACTTAGTTAC AGCTGCTAAT
CCTGCGTTCT ATCACATTCA ACCCAACACT TCGGAAAGTA CCCCTTTCAT TGATCTTTTC
GAAAACTCAA ACCAATTAGA AAGTTTACTG ATCAGAATGC GTAATGAAGA ATCGGTAAAT
CACTTATCAA TCGACCTTAA ATGTAAGTCT CACAATGGCG CTGTGAATAA ATGGGTTCAT
TGTCTGTTTT CACGGATCAC TAGTCAGCGA GTTCAACAGC GCGATATTGA TTCTAGTAAT
CATGGACCTA TTATTGAAGT CATCATGTAT GACGTTACCT CTCGGGCAGA GAAAGAGCTC
AAAACCCGTT TTGAAGCTGA TCATGACGCG TTAACTCACC TTAAGAATCG CCGCGCAGGT
GAATTTGAAA TCGTTAATCT ACTGCAAACC GTTAATTTAC TTGATTTAAG TTTGGTCATT
TTTATGATTG ATTTAGACAA ATTTAAGCCT GTTAACGACA TCTATGGTCA TGACGCCGGC
GACAGGGTTT TAATTGAAGT GAGTAAACGT TTACAGTCGG TTTTTAATGG CAAAAACGAA
CTTTGTAGCC GCTGGGGTGG CGATGAATTT GTAGCAGCTT ACGTGGTAAA CAGTGTCAAT
GTTGAAGAAA TAAGAGCGTT AGCCCAATCG ACACTGAGTA GTCTAAGTCA CCCTATTGAA
ATTTCTGATG AAATAAGTTG TGAAATTGGT GGCAGTATTG GTGTTGTTAT CGCTCCACAA
CATGCCAATA ACGTTAAAGA CTTACTCGCC TGTGCTGATA TGACTATGTA TAAAGTCAAA
GAAAATGGCC GCGGTCATTT TAAGATTTAT GATCCCAGTT GGAAATAA
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| Protein sequence | MINISGKIYI KVALSIAIGA IGTSLITSVL LYFSAVSSEQ SKAEALIEQI GATIRSTASI
ALYVQDEELG QEIVQGLVIN DLIAGAQLTD SLSLKVSFGD LTDTDGLIHT NVQHPFIPEQ
SIGQLLIHPN RHYIQSIARQ KATNDALLLL LYSAIVALFV SILVHKLLTQ PIQNLTASFL
KIDPRNTQTM RTLIHHDNDE IGQLVQGIND LMGELKVTLE NETDLRKKTQ ALESKFRLIF
EQASAGICLI NSNNLVTAAN PAFYHIQPNT SESTPFIDLF ENSNQLESLL IRMRNEESVN
HLSIDLKCKS HNGAVNKWVH CLFSRITSQR VQQRDIDSSN HGPIIEVIMY DVTSRAEKEL
KTRFEADHDA LTHLKNRRAG EFEIVNLLQT VNLLDLSLVI FMIDLDKFKP VNDIYGHDAG
DRVLIEVSKR LQSVFNGKNE LCSRWGGDEF VAAYVVNSVN VEEIRALAQS TLSSLSHPIE
ISDEISCEIG GSIGVVIAPQ HANNVKDLLA CADMTMYKVK ENGRGHFKIY DPSWK
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