| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0004 |
|---|
| Symbol | |
|---|
| ID | 4171829 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 3763 |
|---|
| End bp | 6183 |
|---|
| Gene Length | 2421 bp |
|---|
| Protein Length | 806 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638052998 |
|---|
| Product | DNA gyrase, B subunit |
|---|
| Protein accession | YP_659591 |
|---|
| Protein GI | 109896336 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
|---|
| TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAAG AGAATAAGTA CGATTCGTCG AGTATTAAAG TATTAAAAGG ACTGGATGCC
GTACGTAAAC GTCCTGGTAT GTATATCGGT GATACTGACG ATGGTACAGG CTTACATCAC
ATGGTATTTG AGGTTGTAGA TAACTCTATT GATGAAGCAC TTGCCGGTCA CTGTACTAAC
ATCAATGTGA AAATTCATAC TGATGGTTCC GTGTCAGTTA AAGATGATGG ACGCGGCATA
CCAACTGAAA TTCATGAAGA AGAGGGCGTT TCCGCAGCCG AAGTTATTAT GACCGTTCTT
CATGCCGGTG GTAAATTTGA TGATAACTCC TATAAGGTTT CAGGTGGACT ACACGGTGTT
GGTGTATCAG TCGTAAACGC ACTATCCCGT AAGCTTCAAA TAATGATACG CCGCGCTGGT
GAAGTACACG AGCAAGAGTA TCAACATGGT GTACCTCAAA AGCCTCTAGA AGTTATTGGT
GAATCCGATA CTACCGGCAC AAGTATAAGA TTTTGGCCAA GCGAAGAGAC ATTTACCGGG
ATAGAGTTTC ACTACGATAT TTTGGCTAAA CGTCTACGTG AATTATCCTT CCTAAATTCA
GGTGTTAGCA TCATATTAGA AGATGAACGT GATGGTAAGA AAGATCACTT CATGTATGAA
GGTGGTATTC GAGCATTCGT AGAATATTTG AATCAGAACA AAACACCTGT TCACCAACAA
GTGTTCCATT TTAATAGCCA GCGTGATGAT GGTATTTCAG TAGAAGTTGC GCTGCAATGG
AATGATTCAT TCCAAGAAAA TGTATTTTGT TTCACTAATA ATATTCCTCA GCGCGATGGT
GGGAGTCACT TAGCTGGGTT CCGTGGTGCG CTAACAAGAA CACTTAATAC CTTCATGGAG
AAGGAAGGGC ATAACAAGAA GAACAAAACC AGCGCTAGCG GTGATGATGC TAGAGAAGGA
TTAACTGCGG TCGTTTCAGT TAAAGTACCT GATCCAAAAT TCTCGTCACA AACGAAAGAT
AAACTAGTAT CGTCTGAAGT GCGTCCCGCC GTTGAAACGG TGATGGGCGA AAAGCTAAAT
GAATTCCTAT TAGAAAACCC ATCTGCGAGC AAAATTATTA TCGGTAAGAT TATCGATGCA
GCACGCGCCA GAGAAGCGGC GCGAAAAGCA CGTGATATGA CACGCAGAAA AGGTGCGCTG
GACCTCGCTG GTTTGCCAGG GAAGTTAGCA GATTGCCAAG AGAAAGACCC ATCACTATCT
GAATTATATA TAGTGGAAGG GGACTCTGCT GGCGGTTCAG CCAAGCAGGG CAGAAACAGA
AAGAACCAAG CAATCTTACC TCTTAAAGGT AAAATCCTTA ACGTCGAAAA AGCACGTTTT
GACAAAATGT TATCGTCTCA AGAAGTGGCA ACGCTTATCA CTGCATTGGG CTGCGGTATT
GGGCGTGACG AATATGACCC AGAGAAGCTG CGCTATCATC GCATTATAAT CATGACCGAT
GCTGATGTTG ATGGTTCACA TATTCGTACA TTGTTATTGA CCTTCTTTTA TCGTCAAATG
CCAGAAATTA TTGAACGTGG CTATATTTAC ATCGCGCAGC CTCCTTTGTA TAAAACAAAG
AAAGGCAAAC AGGAACAGTA CCTGAAAGAT GATGATTCAC TCACTAAATA TTTAACAGCT
ATTGCTTTAG ACAATGCTTC AATTCACGTC AACGAAGAAG CACCTGGCTT GAGCGGTGCG
TCTTTAGAGA AGCTTGTTAG CCAATATCAA AACGGTATGA AGATGATAAA ACGCGTTAGT
CGCGTTATGC CTGAGGTGAT TCTAACCAGT CTTATTTATA GCAAAATAAT TACGTTGCAA
GACTTACAAG ACGAAGCAAG CTTGGAAGTT GTTGCCAAAA GTTATACTGA AAGCTTAACA
AGAAATGAAG TTGATGGTGC TACGTATCGT TACGAAGTTA GACTGAACAA CGAGCGTAAG
AACTACTATA TTGCGTTGAT TATTCGTCTA CACGGAATCG ATACTGAGTA TAAAATCGAT
CAAGAATTTA TTGAATCAAT TGAATATACA CGTCTTCGCG AACTGAATGA GTCTATTAAT
GGACTGATTG AAGAAGGTGG TTACGTTAAG CGAAATGATA AAGTCAAAGC AATTTCATCA
TTTGCCGAAG GCTTAGACTG GCTGATGGCA GAATCCAAGA AAGGTCAGTA TATTCAACGC
TACAAAGGAT TGGGTGAGAT GAACCCCGGC CAGCTTTGGG AAACGACTAT GGATCCTGCA
TCTCGCCGTA TGCTTCAAGT GAAAGTGGAA GATGCGATAG CTGCTGACCA ACTGTTTACA
ACGCTTATGG GCGACCACGT AGAGCCAAGA CGAGCGTTCA TTGAAGAAAA TGCACTAAGA
GTAGCGAACC TAGATGTATA G
|
|---|
| Protein sequence | MAEENKYDSS SIKVLKGLDA VRKRPGMYIG DTDDGTGLHH MVFEVVDNSI DEALAGHCTN
INVKIHTDGS VSVKDDGRGI PTEIHEEEGV SAAEVIMTVL HAGGKFDDNS YKVSGGLHGV
GVSVVNALSR KLQIMIRRAG EVHEQEYQHG VPQKPLEVIG ESDTTGTSIR FWPSEETFTG
IEFHYDILAK RLRELSFLNS GVSIILEDER DGKKDHFMYE GGIRAFVEYL NQNKTPVHQQ
VFHFNSQRDD GISVEVALQW NDSFQENVFC FTNNIPQRDG GSHLAGFRGA LTRTLNTFME
KEGHNKKNKT SASGDDAREG LTAVVSVKVP DPKFSSQTKD KLVSSEVRPA VETVMGEKLN
EFLLENPSAS KIIIGKIIDA ARAREAARKA RDMTRRKGAL DLAGLPGKLA DCQEKDPSLS
ELYIVEGDSA GGSAKQGRNR KNQAILPLKG KILNVEKARF DKMLSSQEVA TLITALGCGI
GRDEYDPEKL RYHRIIIMTD ADVDGSHIRT LLLTFFYRQM PEIIERGYIY IAQPPLYKTK
KGKQEQYLKD DDSLTKYLTA IALDNASIHV NEEAPGLSGA SLEKLVSQYQ NGMKMIKRVS
RVMPEVILTS LIYSKIITLQ DLQDEASLEV VAKSYTESLT RNEVDGATYR YEVRLNNERK
NYYIALIIRL HGIDTEYKID QEFIESIEYT RLRELNESIN GLIEEGGYVK RNDKVKAISS
FAEGLDWLMA ESKKGQYIQR YKGLGEMNPG QLWETTMDPA SRRMLQVKVE DAIAADQLFT
TLMGDHVEPR RAFIEENALR VANLDV
|
|---|
| |