| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0002 |
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| Symbol | |
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| ID | 4171827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1541 |
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| End bp | 2644 |
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| Gene Length | 1104 bp |
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| Protein Length | 367 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638052996 |
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| Product | DNA polymerase III, beta subunit |
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| Protein accession | YP_659589 |
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| Protein GI | 109896334 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
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| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000485336 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTCA GTATAAGCAG GGAAAATTTT CTACAACCGC TCCAATTAGT TTCTGGCGCT
GTAGAACGCA GACACACATT ACCTATTCTA TCCAATGTAT TGATCAAAGT AAGCGATAGT
GCTTTGTGGC TAACAGGCAC CGATTTGGAA GTTGAACTAA TTTCAAATGT GACTTTGACG
GGCGATTTTG AAGAAGGTGA AATCACAGTA CCGGCCAAGA AACTGTTAGA TATCATTCGT
GGCTTGACTG AAGGTAGCGA GATTAGTTTT CATGTAGATG GCAACAAAGC TATCCTACGA
TGTGGTCGTA GCAAATATAG TTTATCTACT CTCTCTGCGA ACGATTATCC GAATCTTGAG
GATTGGCAAG GAGAACTTGA ATTTGAAATT TCTCAGGCAA ACCTCAAGCG CTTGATTGAC
AGTGTTCATT TCTCAATGGC TCAACAAGAT GTGCGTTATT ATCTTAATGG GATGTCTTTG
GAAACTGAAG ACAACGTTAT TCGCACAGTT GCCACAGACG GCCACAGGCT GGCTCTATGC
CGCTTAAATT ACACTGATGC TACATTGCCT AATCGTCAGG TAATTATCCC TCGTAAAGGG
GTTATGGAGA TTACTCGGCT TATTGAAGAC AGTGACAAAT CATTAAAGGT ACAGGTGGGT
TCAAACCATA TACGTATTTT TTCTAATGAC TTTATTTTTA CCAGCAAATT GGTTGATGGA
CGTTTTCCTG ATTATCGCCG AGTTTTACCA AAAGACGGTG ACAAGAATAT CATTGCTAGT
AAGCTTGGCC TTAAAAATGC TTTTTCTCGT GCATCGATTC TTTCAAATGA AAAGTTCAAA
GGTGTGCGCT TAAATTTATC ATCTGGTGAA GTAAAAATTA CTGCTAATAA TCCAGAACAA
GAAGAAGCCG TAGAGATTGT AGATGTAGAT TATCAAGGTG GTGATTTAGA GATAGGGTTC
AATGTTGCCT ACCTAATTGA TGTGCTCAAT GCACTGAATG CTGAAGAAGT GAAATTTACC
CTTGCGGATT CAAACAGTAG TGCACTAATT GAAGATGGGT CCGATGACTC TGCACTTTAC
GTTATAATGC CAATGAGGCT GTAG
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| Protein sequence | MKFSISRENF LQPLQLVSGA VERRHTLPIL SNVLIKVSDS ALWLTGTDLE VELISNVTLT
GDFEEGEITV PAKKLLDIIR GLTEGSEISF HVDGNKAILR CGRSKYSLST LSANDYPNLE
DWQGELEFEI SQANLKRLID SVHFSMAQQD VRYYLNGMSL ETEDNVIRTV ATDGHRLALC
RLNYTDATLP NRQVIIPRKG VMEITRLIED SDKSLKVQVG SNHIRIFSND FIFTSKLVDG
RFPDYRRVLP KDGDKNIIAS KLGLKNAFSR ASILSNEKFK GVRLNLSSGE VKITANNPEQ
EEAVEIVDVD YQGGDLEIGF NVAYLIDVLN ALNAEEVKFT LADSNSSALI EDGSDDSALY
VIMPMRL
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