| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Paes_2038 |
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| Symbol | rpsD |
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| ID | 6459991 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prosthecochloris aestuarii DSM 271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011059 |
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| Strand | - |
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| Start bp | 2235009 |
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| End bp | 2235620 |
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| Gene Length | 612 bp |
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| Protein Length | 203 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 642726021 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_002016695 |
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| Protein GI | 194334835 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000016478 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.289482 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCACGAT TCAGAGGTTC AATTACCAAA GTTTCTCGCA GGTTAGGGGT TGCTCTTGCA
CCAAAAGCTG AAAAATACCT CGAGAGAAGA CCATATGCAC CAGGTGAGCA CGGGCAGTCA
AGAAGAAGCA AGATTTCCGA ATACGCTCTG CAGCTTCGTG AGAAACAGAA GATGAAATTC
CTCTACGGTG TGCTGGAAAA GCAGTTCCGT AATTACTACA AGAAAGCTGT GGCGCAGCGT
GGCGTTACTG GTGATAACCT TGTGAAACTC CTCGAAAGAC GTTTTGATAA CGTTGTCTTC
AGGGCAGGTT TTTCTCCTTC AAGAGCAGGA GCACGTCAGC TTGTTACGCA TGGTCATATG
CTTGTCAACG GTCGCAAGGT CAATATCCCA TCGTTTCTTA TGAAACCCGG TGATGCTATC
GAGTTCCGTG AGAAGAGTAA AAATATGGAT GCTGTGACTG AATCGCTCAA TAAAGCTCCC
GAATCCCGGA TTCCTTCCTG GATACAGGTT GATAAGGCAC ATCAGAAAGC TGTCTTTCTG
ACCGTTCCGG AGCGCGAAGA GGTGCAGGAG CCATTTAACG AACAGCTGGT TGTTGAGTTG
TACTCCAAGT GA
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| Protein sequence | MARFRGSITK VSRRLGVALA PKAEKYLERR PYAPGEHGQS RRSKISEYAL QLREKQKMKF
LYGVLEKQFR NYYKKAVAQR GVTGDNLVKL LERRFDNVVF RAGFSPSRAG ARQLVTHGHM
LVNGRKVNIP SFLMKPGDAI EFREKSKNMD AVTESLNKAP ESRIPSWIQV DKAHQKAVFL
TVPEREEVQE PFNEQLVVEL YSK
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