| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Paes_0280 |
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| Symbol | |
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| ID | 6460654 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prosthecochloris aestuarii DSM 271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011059 |
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| Strand | + |
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| Start bp | 295221 |
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| End bp | 297254 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 642724272 |
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| Product | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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| Protein accession | YP_002014984 |
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| Protein GI | 194333124 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.156146 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000355081 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTATCAGT ATCACCGGAG ATTGACCCGC GAGGTCGGTT TCGGCAACAT AAGCCTTGGA
GGCTATCAGC CGATACGGGT TGAGTCGATG ACGACCACCC ATACCATGGA TACGGCCGCA
TCGGTCGAAC AGTGCCGACG TCTCTACGAG GCAGGTTGTG AAATCATCCG ACTGACAGTT
CCAACTGAGA AAGATGCTGA GAACCTGAAA TACATCAGGG AGCAGCTCCG GCGTGATGGT
ATCGAAACGC CTCTGGTAGC AGATATTCAT TTTTCCCGTA AGGCAGCAAT GAAAGCTGTC
GAGTATGTCG ATAATATCAG AATTAATCCG GGTAATTACG CTAACCGTAA AAAATTTTCG
AATCCCGAAT ACAGTGATGC TGATTTTCAG GCCGAGCTTG AAAAGGTGCG CGATGAATTT
ATTCCGCTTA TTGCCAAAGC GCGGGAGTTC GGCGTTTCGA TGCGAATCGG GACTAATCAC
GGTTCTCTGT CCGACAGAAT TGTCAGCCGG TACGGTAATA CGCCTGAAGG CATGGTCGAA
GCTGCGCTTG AGTTTGCCCG GATCTGCGAG AGCGAGGGGT ATGAAGAGAT CCTTTTTTCT
ATGAAATCAT CCAATGTCCG GGTGATGATA GAGGCGTATC GTATGCTGGT GGTCAAATCG
GATGCGCAAT TACGCAATGC GTATCCATTG CACCTCGGCG TGACGGAAGC AGGCGATGGT
GATGAGGGAC GCATTAAATC GTCAATGGGG ATCGGGGCTC TTCTGGAGGA GGGGCTTGGT
GATACCATCA GGGTTTCTCT GACCGAAGAC CCTGTTAATG AAGTCCCTGT CGGGTTTGCT
CTTGTTAAAA AGTATAATGA TTGTCAGCTG GTCCGTGGTG AACGGGGACA TGCGGCAATC
AACAGGGTTA TTGCCAGTGA GAAGGGAAGC GGTTCGGCTG AACTCCCACC TTTCGATCCT
TTCAGTTACC AGAGGCGTTC TTCATCCATG GTTGCCTTTG GATCCTGTGA AGCTGGAGGT
GATGCTCTGC CTCTTGTCGA GTCGATGGCC CGTCATAGCC CTGCCGAAGA TGGCGAGCTG
CTCAAAGAGC TTCGTTCCCG CCTCGCTGTT GACCGGCCTG ATCGTACAGT CAAATCAGAG
TTTGTGACCG TACGGGTGAC GACCGAAGAT GAGGTACGGC TGCTTGGCGC ACAGCTCTGC
CAGCTTGGCG ACGACGCCCG ACGCGTTGGC GCGGCGACAA CCGATCCGTT TCTTGCTCAT
ATGCTGCTTG ACCATGTGGC TAAAGTTCGC CTTGATATTG TTGAAGGGGA GCAGATTGAC
CGGCAGTGGC TCAATGCGCT TGATGATCAT CATGCTGCTC TGGAGTTCTG TTTTATTCAT
GAGTTGGCTT CGGCAAAAGT ACCGGGAGAG GTTCTTGCTC ATATAGCAAG GGCAATGGCC
GGTCGCGGCG TGCGACGGAT GATGTTTTCG ATTGAATCGG CCGAAGCAGT CTATGCCTAT
CGGAGGCTTT TGCAGCGTTT TTCTGCATCA GGCATCGATG CGCCGGTGAT CATTCGTTAC
AGGGGTGATG ATGCCGATCG TCTATCAACG CTTATCGAGT CATCAATTCA GACGGGAAGC
CTCTTTTGTG ACGGTATTGG CGATATGATA GCCCTTGAAA CCGGGCTTGA GGCAGACGAT
GAACTCGCGC TTGCATTCAA CATTCTGCAG GCCGCCCGGG TAAGGATGTC AAAAACAGAA
TTTATTTCAT GTCCGGGATG CGGGAGAACC TATTTCGAGC TGGAAAAAAC AGCCGGAATG
ATCAAGTCAA AAATGGCGCA TCTCAAGGGC TTGAAAATCG GGATTATGGG CTGCATTGTC
AACGGACCGG GTGAGATGGC TGACGCTGAC TTCGGATATG TCGGTGCCGG CAAGGGGCGT
GTATGCCTGT ATGTCGGTAA AGAGTGCGTT GCACCCAACA TTCCTGAACG TGACGCGGTT
GAAAAGCTGA TTGATCTTGT CAAGTCACGC GGGCGCTGGG TTGATCCGGT ATAG
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| Protein sequence | MYQYHRRLTR EVGFGNISLG GYQPIRVESM TTTHTMDTAA SVEQCRRLYE AGCEIIRLTV
PTEKDAENLK YIREQLRRDG IETPLVADIH FSRKAAMKAV EYVDNIRINP GNYANRKKFS
NPEYSDADFQ AELEKVRDEF IPLIAKAREF GVSMRIGTNH GSLSDRIVSR YGNTPEGMVE
AALEFARICE SEGYEEILFS MKSSNVRVMI EAYRMLVVKS DAQLRNAYPL HLGVTEAGDG
DEGRIKSSMG IGALLEEGLG DTIRVSLTED PVNEVPVGFA LVKKYNDCQL VRGERGHAAI
NRVIASEKGS GSAELPPFDP FSYQRRSSSM VAFGSCEAGG DALPLVESMA RHSPAEDGEL
LKELRSRLAV DRPDRTVKSE FVTVRVTTED EVRLLGAQLC QLGDDARRVG AATTDPFLAH
MLLDHVAKVR LDIVEGEQID RQWLNALDDH HAALEFCFIH ELASAKVPGE VLAHIARAMA
GRGVRRMMFS IESAEAVYAY RRLLQRFSAS GIDAPVIIRY RGDDADRLST LIESSIQTGS
LFCDGIGDMI ALETGLEADD ELALAFNILQ AARVRMSKTE FISCPGCGRT YFELEKTAGM
IKSKMAHLKG LKIGIMGCIV NGPGEMADAD FGYVGAGKGR VCLYVGKECV APNIPERDAV
EKLIDLVKSR GRWVDPV
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