Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Paes_0273 |
Symbol | dapF |
ID | 6460750 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prosthecochloris aestuarii DSM 271 |
Kingdom | Bacteria |
Replicon accession | NC_011059 |
Strand | - |
Start bp | 285752 |
End bp | 286546 |
Gene Length | 795 bp |
Protein Length | 264 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642724265 |
Product | diaminopimelate epimerase |
Protein accession | YP_002014977 |
Protein GI | 194333117 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00000651876 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.0000261892 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGAACACAT CGATCAAGTT TTCTAAAATG TCGGGTGCCG GGAACGATTT CATCGTTTTC GATAACATGC ACAAGGACAT TCATCTGTCT GCCGACAACA TCCGCTCTCT CTGCACGAGG CGCACAGGTA TCGGCGCTGA CGGTCTTATT CTCATCGAAC CGTCAGCTCG GTTCGACTTT GCCATGAAGT ACTATAATGC CGACGGGCTG CCAGGATCGA TGTGCGGAAA CGGCGGTCGG TGTGCTGTGT ATTTCGCATG GACCATCGGC GCCTGCGGGA CAACAACGGC ATTTGAAGCT AACGGAAACC GTTATGATGC GTGGGTTTGT GACAATGAAG CGATCAGGCT CAAAATGATT CTCCCCCACG ACTTCCGCGA CGAGTTTGGC TCGAACGGCT TGAGCTGCAA CTTTGTCAAT ACGGGATCAC CGCATACCAT TATCTTCACC GATGAGCTCG ACACCTTTGA CGTTGAATCA ACAGGGCGTC TGATACGTAA CGACAGCAAG CTCTTTCCTG AAGGAACAAA CGTCAATTTT CTGCAGGTCA CCTCTCCTGA AAGCCTCAAG GTAAGAACGT ATGAGCGGGG GGTCGAAGCA GAAACGCTTG CATGCGGCAC CGGGGCCGTA GCCGCTGCGT TAATGAGTTA CAAGCTCGGA AAGATTGCCT CGAGAAGCGT TTCGGTCAGC GTCAGAAGCG GAGATATTCT GACCATCGAT TTTTCAGAAG ACATGCAGGA TGTCTATCTC TCCGGACCGG CGACCATTGT GTATACCGGG TCAATACAGA TGTGA
|
Protein sequence | MNTSIKFSKM SGAGNDFIVF DNMHKDIHLS ADNIRSLCTR RTGIGADGLI LIEPSARFDF AMKYYNADGL PGSMCGNGGR CAVYFAWTIG ACGTTTAFEA NGNRYDAWVC DNEAIRLKMI LPHDFRDEFG SNGLSCNFVN TGSPHTIIFT DELDTFDVES TGRLIRNDSK LFPEGTNVNF LQVTSPESLK VRTYERGVEA ETLACGTGAV AAALMSYKLG KIASRSVSVS VRSGDILTID FSEDMQDVYL SGPATIVYTG SIQM
|
| |