Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_06201 |
Symbol | |
ID | 6306301 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | + |
Start bp | 2853647 |
End bp | 2856568 |
Gene Length | 2922 bp |
Protein Length | 973 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642640062 |
Product | Putative signal protein with GGDEF domain |
Protein accession | YP_001913921 |
Protein GI | 188576992 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.147648 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGGGTTTC AGCAACGCCA ATGGAGGTCG TCGCACCGGC GTGCACCGTT TGCCGTGGTG TTGCTGTTGG CGTTGCTGTC GTTGGCGGAT CTGGCAGGCG CGCAGAGCAT CAGCATCCGG CGGTATGCCC ACGACCAGGG CCTGCTCGGT CTTGCCGGCA CCTGTCTGCT GCAGACCCGC GCCACCTTGC TGTGGGTGTG CACCGAGAGC GGGCTGTATC GCTATAACGG GCGCACGTTT CAACAAGTGC CGCTGGATGG TTTGCGCAAC GAGCCCATCA GTTCGATGAC CGAATCCGCC GATGGGCGGT TGTGGGTGGC CGGCTTTCAG AGCGTGTTCG TCGGCGACGA ACACGGGTTC CGCAAACTGG CGCCGGACGA AGCCCAGCAC CTGCAGGACA AAATCCAACT TGCCGGCCTC CCCTGGGGCA CGGTGCTGCT CAATGAGGGC AGTCTGGAAA TCCTTCAGCC ACGCGCCAAC GGGCACTGGC AGAGCCAACC GTTGCTGGAC ACCGCAACCC GCGTACGCGT TCCCGAGTTG TCCAAGGTGT TCAGCTTGTC GGTGGATGGC AACACGCTGT GGGCGGGTTG CGCTCGCAAG CTGTGCGCCA TCGATGCGCA GCACAAGGTG CAGGTCTTCG GACCGGAACG TGGTGTGCCG GAAGACCGTT GGTCCAGCGT GTTGCGCGAC CAAGACGGCG GGTTGTGGGT GCGCGGTGCC GGCACCCTGC TCTATCGTGC GCGCGGCGCC GACACCTTCA GCGTTCGTCC GCTGCCGCTG CTGGATGGCA GTACGGTCGG TCGGCAGGCG CCGCTGGTGA TGGACCGCGA GGGACGCGTG CTGGTGCGTC GCAACGACGG CCTGGCGCGC TGGGAAAACG GCCGCTGGCG CACGTTTGGC ACCGAGAACG GCCTGCCACC GGCCAGCAGC GATGCGATCC TGGTGGACCG CGAAGGCGAT GTCTGGATGA CCGTCGACGG CGAAGGACTG GTGCGCTGGG CCGGCTACGA ATGGATCGAA AACTGGGACG CTTCGCAAGG CATGCCGGCC GCGCCGACCT GGTCGATCGC CCGCGACGGG CAAGGCGCGT TGCTGGTCGG GAATGAACAC GGCATCGGTC GCCAGACCGA TCCGGATGGG CGCTTCGTCC CGGCCCTGCA CAGCGCCGGC ATCCAGATCG TGGGCATGGA GCGCAGCCAG GACGGCAGTC TGTGGACACT CAGTTCGGCC GGTTTCTTGC GCCGCACCTG GCCGGACGGA CACAGCGCGG AAATCGCCAA GCTGCCGCGC ACTGGGCGTC GCCTGTTGAT CGACCGCCAG GGCCGGCTGT GGATGCTCAG TGCCGGTGGC CTGTTCGTGA TCGAGCACCC GCTCGACGGC GGCAGCATGC AGGCCGTGGC CGACATGCCC GCCATCGCCT ACACCGATGT CCAGCAAACC GCCGACGGAA CGCTGTGGGT CTCCACCTCC AATGGCTTGT TCCGGCTGCA GGATGGGCAC TGGTCCAACG TCAAAGTCCA GGTCAACGGC GGCGCGCCCG AGCCATGGAT CAGCAAGTTC CATATCAGCG ACAGCGGTGA GGTCTGGCTG GCGTTCTATC GCCCCGGCCT GTGGCACGGC ATGTTGCTGC GCGACGGCCT GGACCTGCAA GAAATCAGCG ACGAAGCGCT GCGCGATGTC GGCGTGTATC TGCTGTGCGG CGACAGCGCC GGCCGGGTCT GGGTGGGCCA TACACGTGGC GTGGAGGTCT ACGACGGTGA GCATTGGGCG CATCTGTCGC AGTCGCAGGG GTTGATCTGG GAGGACATCT CCGAGGCGGC GTTTGCCGAA GATCCGGATG GTTCGATCTG GATCGGCACC GCACGCGGGG TGAGCCACCT GAGCGACCCG GCGCACCTGT TCGACGAGCG CCAGCCGAGC GTACGCATCG ACAGCCTCAG CCGCGGCGGG ATGCCGGTGC AGCGCGGGCA ACTGCTGGGC TGGAGCGACA AACCGCTGCA TATCGAGCTG TCGACGATGG AGGTCTACGA CGACCCCAGC CGCCTGACGG TGCGTTATCG CCTGCTCGGC CTGCACGACG AATGGATTCA GAGCGACAAC CTGTCCATCG ACCAGCCCCC CCTGCCCTCC GGGCATTTCC GCCTGCAGGT CCAGGTGCTG GATCGCTACC GTCGCACCGC ATCGCCCATC GCCGACCTGC CCTTCGCGGT CGCGCCGCTG TGGTGGCGTA GCCCGCCGGC GATCGCACTG TATGTACTGA TTGGCGGCGG CCTGTTGATC GGCCTGTGGC GCTGGCGGCA CCGCCATCTG GTGGCGCGCG AACGCATGCT GGCCGAATTG GTGTCCGAGC GCACTTACCA GCTGGAGCGC GAAAAACGCG AACTGGAAAA CGCGCGCGCG GCATTGGCCT TGAAGGCCAG CCACGACGCG CTGACCGGCC TGCTCAATCG CTCCGGCATC CTGGAAGCGA TGGCCGCAGA ACTGCAGGGC TGCGCGCACG GCGAGCATCC GCTGGCAGTG GTGTTGATCG ATCTGGACCA CTTCAAACAG GTCAACGACG ACCATGGGCA CCTGGTCGGC GATGCGGTGC TGGCCACGGT GGGCGCGCGG CTGACGGCCT GCCTGCGCGA TTCGGACAAG GTGGGCCGCT ACGGCGGCGA AGAATTGCTG CTGTTGCTGC CGGGCGTGAT CCAACAGAGC CAGCGCCGGC TGCGCGCCAT CCACGAAGCG CTCAGCCTGG CCCCCTACGA AGTGGGTGCC GCACGCCCGC TGCAGGTGAC CTGTTCGGTG GGCGTGTCCT GGTTCCGCGT CGGCGACACC GCCGCGTCGT TGCTGGCGCG TGCCGACGAG GCGCTGTATC GCGCCAAGCG CTCGGGCCGT AATCGCATCG AACCAGCGGA ACCGGAGAGT TCGGTGGCAT AG
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Protein sequence | MGFQQRQWRS SHRRAPFAVV LLLALLSLAD LAGAQSISIR RYAHDQGLLG LAGTCLLQTR ATLLWVCTES GLYRYNGRTF QQVPLDGLRN EPISSMTESA DGRLWVAGFQ SVFVGDEHGF RKLAPDEAQH LQDKIQLAGL PWGTVLLNEG SLEILQPRAN GHWQSQPLLD TATRVRVPEL SKVFSLSVDG NTLWAGCARK LCAIDAQHKV QVFGPERGVP EDRWSSVLRD QDGGLWVRGA GTLLYRARGA DTFSVRPLPL LDGSTVGRQA PLVMDREGRV LVRRNDGLAR WENGRWRTFG TENGLPPASS DAILVDREGD VWMTVDGEGL VRWAGYEWIE NWDASQGMPA APTWSIARDG QGALLVGNEH GIGRQTDPDG RFVPALHSAG IQIVGMERSQ DGSLWTLSSA GFLRRTWPDG HSAEIAKLPR TGRRLLIDRQ GRLWMLSAGG LFVIEHPLDG GSMQAVADMP AIAYTDVQQT ADGTLWVSTS NGLFRLQDGH WSNVKVQVNG GAPEPWISKF HISDSGEVWL AFYRPGLWHG MLLRDGLDLQ EISDEALRDV GVYLLCGDSA GRVWVGHTRG VEVYDGEHWA HLSQSQGLIW EDISEAAFAE DPDGSIWIGT ARGVSHLSDP AHLFDERQPS VRIDSLSRGG MPVQRGQLLG WSDKPLHIEL STMEVYDDPS RLTVRYRLLG LHDEWIQSDN LSIDQPPLPS GHFRLQVQVL DRYRRTASPI ADLPFAVAPL WWRSPPAIAL YVLIGGGLLI GLWRWRHRHL VARERMLAEL VSERTYQLER EKRELENARA ALALKASHDA LTGLLNRSGI LEAMAAELQG CAHGEHPLAV VLIDLDHFKQ VNDDHGHLVG DAVLATVGAR LTACLRDSDK VGRYGGEELL LLLPGVIQQS QRRLRAIHEA LSLAPYEVGA ARPLQVTCSV GVSWFRVGDT AASLLARADE ALYRAKRSGR NRIEPAEPES SVA
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