Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_04696 |
Symbol | imcF |
ID | 6304843 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | + |
Start bp | 1314045 |
End bp | 1317737 |
Gene Length | 3693 bp |
Protein Length | 1230 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642638616 |
Product | ImcF-related family |
Protein accession | YP_001912493 |
Protein GI | 188575564 |
COG category | [S] Function unknown |
COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00810675 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTCTCG GCTTGCTCGC CGCCGCCGCA GTCGCCTACT TCGGCACCGA GGGCTTGCGC GAAATTGGCC TGTGGGCGGC GGCGGTGCTG GCGGTCTGTC TGACGATATG GCTGCTGGTG TGGATCGTGC GCCGGATCAT TGCGCGCCGC GCTGCGCGCA GCCTGGATGC GATGGTGCAA GGCGAAGCCG ATCGCGCGGT CGCCGCCGCG CAGCCGGCCA ACCGCGCCGA CACCGAAGCG CTGCGCTCGC GCATGTTAGA GGCGGTCAAG GCGATCAAGT CCTCGCGCCT GGGCGTGCTC AAGGGCAAGG CGGCGCTGTA CGAACTGCCG TGGTACGTGA TCATTGGCAA TCCTGCGGCT GGCAAGAGCA CCGCGATCCT CAATTCCGGG TTGCAGTTCC CGTTCGAGGA CAATCGCGGC AACGTGATCC AGGGCATCGG CGGCACGCGC AATTGCGATT GGTACTTCAC CATGACCGGT ATCGTGCTTG ATACCGCCGG TCGGTATTCG GTCAGTGTCG AAGACCGCCT GGAATGGCTC ACCTTTCTCG CGCTGCTGAA AAAGCACCGG CCGCGCGCGC CGATCAACGG CATCATCATC GCCGCCAGCA TCGCCGAACT GTCCGGTAGC AAGCCCGAGT TCGCGATCGA GCTGGCCAAG AACCTGCGCC AGCGCGTGCA GGAAATTACC CAGCGCCTGG AAGTGTTCGC GCCGGTGTAC GTGGTGTTTA CCAAGGCCGA CCTGATCGCC GGCTTCTCCG AATTCTTCCA CAATCTGGAT CCGTCCGAGC GCGAGAACGT GTGGGGTGCG ACCCTGCCCT ACGATCCGAC CGCCAATACC GATGCGCTGG CCGCCTTCGA CACTCATTTC GACGAACTGG CCGAAGGCCT CAAGGAAATG AGCCTGGCGC ACATGGCGAT GCAGCGTGGG CGTCAGGTGT CGCCGGGCCT GCTGACACTG CCGCTGGAGT TCGTCGGCAT CAAACCGGCG CTGCGCACCT TCATCGCCAC GCTGTTCGAA GAAAACCCCT ATCAGTTCAA GCCGGTGTTC CGCGGTTTCT ACTTCAGCAG CGCGTTGCAG GAAGGCCATT CCGTGCACCA CGCCTCCGAG CGGGTGAGCC GCCAGTTCGC GCTGCAGGCG CGTGCGCAAT CCGGCGAAGC GGTGCCGTCG GGACAGACCG CTTACTTCCT GAAAGACCTG TTCCGCAAGG TCATCTTCAC CGACAAACAG CTCGTCCGGC AGTACTCCAG CCCGCACCAG AACCGCCTGC GCTACGGCGT CTTCCTCGGT GGCGTCGCCG TGCTGGCGTT GGCGCTGGGT CTGTGGACCT GGTCGTACAC CACCAACGTG CAACTGGTGA ACAACGCCAC CAAGGATCTG GATCAGGCCG TGCGCGTGCA GGCCAACCGG GTCGACTTGC AATCGCGCAT CGACGCGCTG CTGCTGTTGC AGGATCGGCT CGAGCAGCTG GACCGCTACA AGCAAAAGGG CGGCATCACC TCCGGGCTGG GCCTGTACCA GGGCGGCAAC ATCCGCAAGA AGCTGCTGGC CGAGTACTAC AACGGCATGC GCCAGGTGAT GCTTGAGCCG ACCACCGCCA ATCTGGAGTC GTTCCTGGGG CAAGTGGTCA GCGAGCGCGA CAGGCTCGGC AAGGCGGCCG GCCCGCAGCA GGCCGCGCAG CAAGACAGCG TGCTGTATCA GGACGCGTCG CCGACCGATA CCAACGACGC CTACAACGCG CTGAAGACCT ACCTGATGCT GGGCAACCGC AAGCACGTGG AGAGCGCGCA CCTGACGCAG CAGCTGACCC TGTTCTGGCG CGGCTGGCTG GACGCCAATC GCGGCCAGAT GACCCGCGAG GAGATGACCC GCGCGGCCGA GAAGCTGATG ACGTTCTACG TCGCCCAGGC CGAAGATGCG CAGTGGCCGC AGGTGCAGAC CAAGGTCACC CTGGTCAACG ACAGCCGCGA GGCGCTGACC CGGGTGATGA AGGGCCAGCC GGCGATGCAA CGCGTATTCG CGCAGATCAA GGCGCGCGCG GCGGCGCGCT TCCCCACGGT GACGGTCAAC GCGCTGATCG GCGAGGAAGC CAACAGCGGC GCGATCACCG GCAGCTATGC CATTTCCGGG GCGTTCTCGC GCGAGGCGTG GGAAGAATAC GTCAAGGACG CGATCAAGGA AGCGGCCAAT ACGCAGCTCA GCACCACCGA CTGGGTCCTG GACACGAGCG AGCAGAGCGA CCTGTCGCTG GCCGGCAGCC CTGAGCACGT CGCGCGCGAA CTGGTGACGG CGTACAAGCA GGAATACGCC AAGGAGTGGC GCAAGTTCAT CCAGGGGATC AGCGTGGCGC CGTTCCATGG CTTCGACCAG GCGCTGTCGC GGATGAATCG CATCGGCGAT CCGGCCAACT CGCCGTTGCG CAAGCTGCTG GAAAAGATCA ACGAGCAGAC CATCTGGGAC AACCCGATGG CCGACGCCTT ATCGAAGAAG GCGTCCGGCG GGGTCGTCGC CTGGTTCCAG CGGGTGATCC TGCGCCGCGA TCCGGCCGAA GCCGGCAAAG CTGAGCAGCA GCCGGTCGGC CCGATCGGCA AGACCTTCGA GGGCCTGGCG CGGCTGATGA CCAAGCGCAC GGACCAGCCG GCGGTCATTG ATGCCTACTT CGACAAGTTG GCCAAGTTGC GCACGCGCAT GAACGCGATC AAGAACCAGG GCCAGATCGG CGTCGGCGCG CGCAAGCTGA TGCAGGACAC CTTCAGCAAC GAAGGCTCCG AACTCAGCGC CGCGCTGACC CTGGTGGACG AGCAGATGCT GACCGGGCTG GATGAAACCC AGCGCGACGC GATGCGTCCG CTGTTGCTGC GTCCGTTGAC CCAGACCTTC GCCGCGCTGG TGCCGCCGAC TGAGAACGAG ATCAACCGGG TGTGGGCGGC GCAGGTCTAC GAACCGTTCC GTAACGGCAT CGGCCAGCGC TATCCGTTCA ACCTCAACAC GGACGTGGAT GCCGCCCCCG GCGACGTGGC TGCGATCTTC GGCGCCAGCG GCGCGATCGC CGCGTTCAAC AAGGACGCAC TCGGCACCTT GGTGATCCAG CGCGGCAACC TGCTCGAATC GCGGCGTTGG GCGGGCATCG GCATCACCTT GTCCAGCGAA CTGGTGGCCA ACTACGGCAA CTGGGTCAGC GGCCAGTCCG GCGCGGTGGC CAAGGACGTC AGCATCTTCG AGCTCCTGCC GATGCCGGCG GTAGGCGCGA TCGAATACAC CATCGACATC TCTGGCCAGA CGCTGCGCTA CCGCAACACC CCGCCGCAGT GGATGACCAT GCAGTGGCCG AACGCCGGTG CGGTGCCCGG TGCCAAGATC ACCGCGGTCA CCAGCGACGG GCGCAGCGTC GAGATGTTCA ATGCGCCTGG CGACAATGGC CTTGGCCGCT TGATCAAGGC AGCCGCCCAG GAACCCGTGG ACGATGCCAC CCGTCGCTTC ACCTGGAGCG ACCAAGGCGT GTCCATCAGC GTGCAGATGC GCATCGTGCA GAGTGCCGGC AAGGCTACCG GGGGGGGCGA CTGGCAGCGT GGCCTGCAAC TTCCGGCGAC GGTGGCCGGT AGCCCGACAA CCGTCGGTGC CGATGCGCCA GCGGCCGCTG CGCCGCCCGG TTCGGTTCCG GCGGGTGCGT CCGCACAAGA AGGTGGCCAA TGA
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Protein sequence | MILGLLAAAA VAYFGTEGLR EIGLWAAAVL AVCLTIWLLV WIVRRIIARR AARSLDAMVQ GEADRAVAAA QPANRADTEA LRSRMLEAVK AIKSSRLGVL KGKAALYELP WYVIIGNPAA GKSTAILNSG LQFPFEDNRG NVIQGIGGTR NCDWYFTMTG IVLDTAGRYS VSVEDRLEWL TFLALLKKHR PRAPINGIII AASIAELSGS KPEFAIELAK NLRQRVQEIT QRLEVFAPVY VVFTKADLIA GFSEFFHNLD PSERENVWGA TLPYDPTANT DALAAFDTHF DELAEGLKEM SLAHMAMQRG RQVSPGLLTL PLEFVGIKPA LRTFIATLFE ENPYQFKPVF RGFYFSSALQ EGHSVHHASE RVSRQFALQA RAQSGEAVPS GQTAYFLKDL FRKVIFTDKQ LVRQYSSPHQ NRLRYGVFLG GVAVLALALG LWTWSYTTNV QLVNNATKDL DQAVRVQANR VDLQSRIDAL LLLQDRLEQL DRYKQKGGIT SGLGLYQGGN IRKKLLAEYY NGMRQVMLEP TTANLESFLG QVVSERDRLG KAAGPQQAAQ QDSVLYQDAS PTDTNDAYNA LKTYLMLGNR KHVESAHLTQ QLTLFWRGWL DANRGQMTRE EMTRAAEKLM TFYVAQAEDA QWPQVQTKVT LVNDSREALT RVMKGQPAMQ RVFAQIKARA AARFPTVTVN ALIGEEANSG AITGSYAISG AFSREAWEEY VKDAIKEAAN TQLSTTDWVL DTSEQSDLSL AGSPEHVARE LVTAYKQEYA KEWRKFIQGI SVAPFHGFDQ ALSRMNRIGD PANSPLRKLL EKINEQTIWD NPMADALSKK ASGGVVAWFQ RVILRRDPAE AGKAEQQPVG PIGKTFEGLA RLMTKRTDQP AVIDAYFDKL AKLRTRMNAI KNQGQIGVGA RKLMQDTFSN EGSELSAALT LVDEQMLTGL DETQRDAMRP LLLRPLTQTF AALVPPTENE INRVWAAQVY EPFRNGIGQR YPFNLNTDVD AAPGDVAAIF GASGAIAAFN KDALGTLVIQ RGNLLESRRW AGIGITLSSE LVANYGNWVS GQSGAVAKDV SIFELLPMPA VGAIEYTIDI SGQTLRYRNT PPQWMTMQWP NAGAVPGAKI TAVTSDGRSV EMFNAPGDNG LGRLIKAAAQ EPVDDATRRF TWSDQGVSIS VQMRIVQSAG KATGGGDWQR GLQLPATVAG SPTTVGADAP AAAAPPGSVP AGASAQEGGQ
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