| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_04049 |
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| Symbol | topA |
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| ID | 6304192 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | - |
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| Start bp | 693468 |
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| End bp | 695960 |
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| Gene Length | 2493 bp |
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| Protein Length | 830 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642637973 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001911856 |
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| Protein GI | 188574927 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCAAGC ACCTGCTCAT CGTCGAATCG CCCGCCAAGG CCAAGACGAT CAATAAATAC
CTCGGCAAGG ACTTCACCGT CCTGGCCTCG TATGGGCACG TGCGCGACCT GGTCCCCAAG
GAAGGCGCGG TCGATCCGGA CAACAGCTTT GCGATGCGTT ACGACCTGAT CGAGAAGAAC
GAGAAGCATG TCGAAGCCAT CGCGCGTGCT GCCAAGGGCG CCGACGACAT CTTTCTGGCG
ACCGACCCGG ACCGCGAGGG CGAGGCGATC AGCTGGCACA TTGCCGAGAT CCTGAAAGAG
CGGGGCCTGC TCAAGGACAA GCCGATGCAG CGGGTGGTGT TTACCGAAAT CACCCCGCGC
GCGATCAAGG AAGCCATGCT CAAGCCGCGC GCGATCGCCG CCGACCTGGT GGATGCGCAG
CAGGCGCGCC GCGCGCTGGA TTATCTGGTC GGCTTCAACC TGTCGCCGGT GCTGTGGCGC
AAGGTGCAGC GCGGGTTGTC GGCCGGTCGC GTGCAGTCGC CGGCGCTGCG CATGATCGTG
GAGCGCGAAG AAGAGATCGA AGCCTTCATC GCGCGCGAAT ACTGGTCCAT CGATGCGCAT
TGCCGGCATC CATCGCAGGC TTTCAATGCA CGGCTGATCA AGCTGGACGG GCAGAAATTC
GAGCAGTTCA CCGTCACCGA CGGCGACACC GCAGAAGCGG CGCGGCTGCG CATCCAGCAG
GCCGCGCAAG GCGTGCTGCA TGTGACCGAT GTGGCCAGCA AGGAGCGCAA GCGTCGCCCT
GCCCCGCCGT TCACCACTTC CACGCTGCAG CAGGAAGCTT CGCGCAAGCT CGGGTTCACC
ACCCGCAAGA CCATGCAGGT GGCGCAGAAG TTGTACGAAG GCGTGGCGCT GGGCGACGAA
GGCTCGGTCG GCCTGATCAG CTATATGCGT ACCGACTCGG TGAACCTGTC GCAGGACGCG
CTGTCGGAAA TCCGCGACGT GATCGCGCGC GATTACGGCA CCGCCTCGCT GCCGGACCAG
CCCAACGCCT ACACCACCAA ATCCAAGAAC GCGCAGGAAG CCCACGAAGC GGTGCGCCCG
ACCTCGGCAC TGCGTACGCC GGCACAGGTG GCGCGCTTCC TGTCCGACGA CGAGCGCCGC
CTGTATGAGT TGATCTGGCG CCGCGCCGTG GCCTGCCAGA TGATTCCGGC CACGCTCAAC
ACCGTCAGCG TGGATCTGTC GGCCGGAAGC GAGCACGTAT TCCGCGCCAG CGGCACCACG
GTGGTGGTCC CCGGCTTCCT GGCCGTCTAT GAGGAAGGCA AGGACACCAA GAGCAGCGAG
GACGAGGACG AAGGCCGCAA GTTGCCGCTG ATGAAGGCCG GCGACAACAT CCCGCTGGAC
CGCATCGTCA CCGACCAGCA CTTCACCCAG CCGCCGCCGC GCTTCACCGA AGCGGCGCTG
GTCAAGGCGC TGGAGGAATA CGGCATCGGC CGTCCCTCCA CCTACGCCTC GATCATCCAG
ACCCTGCAGT TCCGCAAGTA CGTCGAGATG GAAGGCCGCA GCTTCCGCCC CACCGACGTC
GGCCGTGCGG TATCCAAGTT CCTTTCCGGG CATTTCACCC GCTACGTGGA TTACGACTTC
ACCGCCAAGC TCGAAGACGA CCTGGATGCG GTCTCGCGTG GCGAGGCAGA GTGGATCCCG
TTGATGGAGA AGTTCTGGGG CCCGTTCAAG GAACTGGTCG AGGACAAGAA GGATTCGCTG
GACAAGACCG ACGCCGGCAG CGTGCGCGTG CTCGGCACCG ACCCGGTCAG CGGCAAGGAA
GTCAGCGCGC GCATCGGCCG CTTCGGCCCG ATGGTGCAGA TCGGCAGCGT GGAAGACGAA
GATAAGCCCA CGTTTGCGTC GCTACGTCCG GGCCAGAGCA TCTATTCGAT CTCGATCGAA
GACGCCCTGG AACTGTTCAA GATGCCGCGC GCACTGGGCC AGGACAAGGA CCAGGATGTC
AGCGTGGGCA TCGGACGCTT CGGCCCGTTT GCGCGCCGTG GCAGCGTGTA TGCGTCGCTG
AAGAAGGAAG ACGACCCGTA TACCATCGAC CTGGCGCGTG CGGTGTTCCT GATCGAAGAG
AAGGAAGAGA TTGCGCGCAA CCGCGTGATC AAGGACTTCG AAGGCAGCGA CATCCAGGTG
CTCAATGGCC GCTTCGGTCC GTACATCAGC GATGGCAAGC TCAACGGCAA GATCCCCAGG
GATCGCGAGC CGGCGTCGCT GACGTTCGAA GAAGTGCAGC AGTTGCTGGC CGATACCGGC
AAGCCGGTGC GCAAGGGCTT TGGCGCCAAG AAGGCCACGC TCAAGAAGAA CGCGGTCAAG
GATTCGGCGC CAAAGAAGCC CGCAGCCAAG AAAACCGCGA CCAAGACGGC GGCCAGCAAG
ACCGCTGCAA AGAAGGCGCC GGCCAAGAAA GCGGCTGCCG AGAAAGGAAC CAAGCGCGTG
GTCAAGAAGA CCGTGAGCAA GGCCGCAGAC TAA
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| Protein sequence | MPKHLLIVES PAKAKTINKY LGKDFTVLAS YGHVRDLVPK EGAVDPDNSF AMRYDLIEKN
EKHVEAIARA AKGADDIFLA TDPDREGEAI SWHIAEILKE RGLLKDKPMQ RVVFTEITPR
AIKEAMLKPR AIAADLVDAQ QARRALDYLV GFNLSPVLWR KVQRGLSAGR VQSPALRMIV
EREEEIEAFI AREYWSIDAH CRHPSQAFNA RLIKLDGQKF EQFTVTDGDT AEAARLRIQQ
AAQGVLHVTD VASKERKRRP APPFTTSTLQ QEASRKLGFT TRKTMQVAQK LYEGVALGDE
GSVGLISYMR TDSVNLSQDA LSEIRDVIAR DYGTASLPDQ PNAYTTKSKN AQEAHEAVRP
TSALRTPAQV ARFLSDDERR LYELIWRRAV ACQMIPATLN TVSVDLSAGS EHVFRASGTT
VVVPGFLAVY EEGKDTKSSE DEDEGRKLPL MKAGDNIPLD RIVTDQHFTQ PPPRFTEAAL
VKALEEYGIG RPSTYASIIQ TLQFRKYVEM EGRSFRPTDV GRAVSKFLSG HFTRYVDYDF
TAKLEDDLDA VSRGEAEWIP LMEKFWGPFK ELVEDKKDSL DKTDAGSVRV LGTDPVSGKE
VSARIGRFGP MVQIGSVEDE DKPTFASLRP GQSIYSISIE DALELFKMPR ALGQDKDQDV
SVGIGRFGPF ARRGSVYASL KKEDDPYTID LARAVFLIEE KEEIARNRVI KDFEGSDIQV
LNGRFGPYIS DGKLNGKIPR DREPASLTFE EVQQLLADTG KPVRKGFGAK KATLKKNAVK
DSAPKKPAAK KTATKTAASK TAAKKAPAKK AAAEKGTKRV VKKTVSKAAD
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