Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_03550 |
Symbol | |
ID | 6308592 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | + |
Start bp | 5177552 |
End bp | 5178196 |
Gene Length | 645 bp |
Protein Length | 214 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642642305 |
Product | peptidase, S54 (rhomboid) family |
Protein accession | YP_001916130 |
Protein GI | 188579201 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCCGCTGC TGTTCGCGAC GGTGTGGCTG GCCTATCTGT GGTCGATCAG CCGGCCGGGC GAGGCGCGCA ATACGCTGTG GCTCGACTGG GGCGCGCTCT CCAGCGGCGT TTCCAATCTG GGCGACTGGT GGGCGACCTT GCGCGACGGC AGCGTGCTGC GTCTGTTCAC TGCGCTGTTC CTGCATGCCG ACTGGTCGCA TCTGCTCGGC AACCTGATGT TTTTGCTGAT CTTCGGGTTG CCGGCCGAGC GCATCCTGGG CCCGTGGCGG TTATTGCTGC TGTTTCTGGT TGGCGGCGCG GCCTCCAACC TGGCGGCGAT CTTTGCCATC GGTACGCCGG ACCGGGTGAT CATCGGCGCC TCGGGTGCGG TGTCGGCATT GATCGGCACG TATCTGGCGC TGTTTCCGGG CGCCAAGCTG GGCGTGGTGC TGCCGCTGGG CGTCTTCCTC GAATTCATCC GCGTGCCGGC GCCATTGTTG ATCGGCGCCT GGGCGCTGTT GCAGGTGGTG TTCGCCTATA TCGGCCCGGC CTTCGGCATG GTGGCGTGGT CGGCGCATAT CGCCGGCTTT GTGTTCGGCA TCGTGTACGG CTTGTCCGTG CGCGCGGCGA TCGCGCGGCG GCTGCGCAAG CGCCACGGCT TCTGA
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Protein sequence | MPLLFATVWL AYLWSISRPG EARNTLWLDW GALSSGVSNL GDWWATLRDG SVLRLFTALF LHADWSHLLG NLMFLLIFGL PAERILGPWR LLLLFLVGGA ASNLAAIFAI GTPDRVIIGA SGAVSALIGT YLALFPGAKL GVVLPLGVFL EFIRVPAPLL IGAWALLQVV FAYIGPAFGM VAWSAHIAGF VFGIVYGLSV RAAIARRLRK RHGF
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